KEGG   Brassica rapa (field mustard): 103869612
Entry
103869612         CDS       T03449                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    103869612
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:brp03021]
    103869612
Enzymes [BR:brp01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     103869612
Transcription machinery [BR:brp03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     103869612
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5 CFAP77
Other DBs
NCBI-GeneID: 103869612
NCBI-ProteinID: XP_009145936
UniProt: M4E0I2
LinkDB
Position
A05:complement(21727015..21732627)
AA seq 1169 aa
MTDIDIEEIEAAGEVDLRDLGDPFLQSFCKKAATSFFDEYGLVSHQLNSYNFFIEHGLQS
VFESSGEMLVEPSFDPTKNKDHEWRYATVKFGEVSVDKPTLYSDDKELVFLPWHARLQNM
TYSARMKVNVDVEVFVKKVVKRDKFKTGQDEYVEKQILSKKTQDIPIGRIPVMVKSVLCN
TTEKGKHVESYRKGECAFDQGGYFVIKGAEKVFIAQEQMCTKRLWISNSPWTVSYRSETK
RNRFIVRLSENQKAEDFKRKEKVLTVYFLSTEIPVWVLFFALGVASDKEAVDLIAFDGGD
ASITNSVVASIQEADSVCEDFRHGRNALAYVEQQIKGTKFPPGESVDECLSLYLFPGLKS
LKQKARFLGYMVKCLFSAYAGKRKCENRDNFRNKRIELAGELLERELRVHLAHARRTMTK
AMQRHLTGDGDLKPIEHYLDASIITNGLSRAFSTGAWCHPFRKMERVSGVVANLGRANPL
QSLIDLRRTRQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNLSLLGLVSTQI
MEPVVEKLFDSGMEELVDDTSTPLSGKHKVLLNGDWVGVCSDSDYFVAELKSRRRQSELP
RQMEIKLDKDDKEVRIFTDAGRLLRPLMVVENLHKLKQSKPSKYTFEHLLDQGILELIGI
EEEEDCTTAWGTKQLLKQQKSYTHCELDLSFLLGVSCAIVPFANHDHGRRVLYQSQKHCQ
QAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTMASECLQKDVLFNGQNAIVAVNVHLGFNQ
EDSIVMNKASLERGMFRSEQIRSYKADVDSKDSEKRKKMDEVVQFGKTHSKIGRVDSLDD
DGFPFVGANMHSGDIVIGRCTESGTDHSVKLKHTERGIVQKVVLSSNDDGKNYATVSLRQ
VRSPCLGDKFSSMHGQKGVLGYIEEQENFAFTNQGIVPDIVINPHAFPSRQTPGQLLEAA
LSKGIACPMQKKKGKSDAYSKVTRHATPFSTPSVDDITDQLHRAGFSRSGNERVYNGRTG
EMMRSLIFMGPNFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL
IAHGASANLHERLFTLSDSSQMHICRNCKSAANVIERVASSGRRIRGPYCRLCESPDYVV
MVNVPYGAKLLYQELFSMGICLNFETNLC
NT seq 3510 nt   +upstreamnt  +downstreamnt
atgactgatatagacattgaagagattgaggccgccggggaagtcgatttacgcgaccta
ggggatccttttctccagagcttctgcaagaaagctgcgacgtccttcttcgacgagtac
ggcctcgtcagccaccagctcaactcctacaacttcttcatcgagcacggtcttcagagc
gtgtttgagtcctccggtgagatgctcgttgagccgtcctttgatcctacgaagaacaag
gaccatgagtggagatacgcgacggtgaagttcggagaagtcagcgtggataagcctacc
ttgtactctgatgataaggagcttgtgtttctcccgtggcacgctaggcttcagaacatg
acctactctgccaggatgaaagttaatgtcgatgttgaggtgttcgttaagaaagttgtt
aaaagagacaagttcaagacgggacaagacgaatacgtcgagaagcagatattgtctaag
aaaacgcaggacatcccaattggtaggatacctgtgatggtgaagtctgtgctttgcaac
acaacggagaaagggaagcatgtggaaagctacagaaagggggagtgtgcatttgaccag
ggtggatactttgtgataaaaggagctgagaaggtctttattgctcaagaacagatgtgc
acaaagagactttggatttctaattcaccatggaccgtctcctacaggtccgaaaccaaa
aggaatcgtttcattgtgcgtctatcagagaatcagaaagctgaagactttaagagaaaa
gagaaagtactgacagtgtacttcctgtcaactgagatcccagtctgggtcctgttcttt
gcgctgggtgttgcgtcagacaaagaggctgtagatctaattgctttcgatggtggtgat
gcaagtattaccaacagcgtcgtagcttcgatccaggaagctgattcggtttgcgaagat
tttcgccatgggaggaatgctctggcatatgttgaacagcagataaaaggcacaaaattc
ccacctggtgagagtgtggatgaatgcctaagtctgtacctgtttccaggcctcaagagt
ttgaagcagaaagcacgtttcctgggctacatggtgaaatgcctttttagcgcatatgct
gggaaaagaaagtgtgagaacagagacaactttaggaacaagaggatcgaactagctgga
gagctgctggaaagggaactaagggtgcatttggcgcatgctagaagaacaatgaccaaa
gccatgcagagacacctcacgggggatggcgatctgaagcctatcgagcactacttggat
gcttccattataacaaatggacttagtagagccttctccactggagcatggtgtcatcct
ttcaggaagatggaaagggtttcaggtgttgtcgctaatctgggtcgtgcaaatccactc
cagagtttgattgatctgcggagaacgcggcaacaggtcctgtataccggcaaagttgga
gatgctagatatccgcatccctctcactggggcagagtatgctttttgtcaaccccagat
ggcgaaaattgtggtcttgtgaagaacctgtctctccttggacttgtcagcactcaaatt
atggagcctgtggtggaaaaactcttcgatagtggaatggaagagctggtggacgatacc
agtacaccactgagcgggaagcacaaggttctcctcaatggagactgggttggagtatgt
tcagattctgactactttgttgcggagttaaaaagcaggaggcgtcaaagtgaattacct
cgtcagatggaaattaagctagataaagatgacaaggaggtacggatttttactgacgct
ggcagacttctccgtcccctcatggttgtggaaaatctccacaagttgaagcaaagtaaa
ccatcgaagtacacctttgagcatcttcttgaccaagggattctcgagctgatcgggatt
gaggaagaagaagactgtaccacagcatggggaaccaagcagcttctgaaacagcagaag
agttacactcactgcgaactggatttgtccttcctgttgggtgtgagctgtgcgattgtg
ccgtttgcgaatcatgatcatggtaggagagttctctaccagtcccagaagcattgccag
caagccattgggttctcctcaacgaaccctaacatccgctgtgataccctgtcccagcag
ctgttctatccccagaagccacttttcaagacaatggcgtcagagtgtcttcagaaggat
gtgttgttcaatggtcagaacgcaattgttgctgtgaatgttcatctcgggttcaaccag
gaggactccattgtgatgaacaaggcttcgctggaacgtggtatgttccgttcagaacag
atcaggagctataaagctgatgttgacagtaaagactcggagaagaggaaaaagatggac
gaggttgttcagtttggaaagacacacagcaagattggcagagtagacagcctagatgat
gacgggttcccctttgttggtgctaatatgcacagtggtgatattgtcattggcagatgc
accgagtctgggactgatcacagcgtgaaactgaagcacactgagagagggatagtgcag
aaggtggttctatcatccaatgacgatgggaagaattatgctactgtttctctgagacag
gttcgttctccatgtcttggagataaattttccagtatgcatggccagaagggtgtttta
ggctatatagaggagcaggagaattttgctttcacgaatcaaggcatagttcctgacatc
gtgatcaacccgcatgcattcccttctcggcaaacaccgggccaactcttggaggctgct
ctgtccaaaggaatagcttgtcctatgcaaaagaagaagggcaagtctgatgcatactcc
aaagtgacacgccatgccactcctttctccactcccagtgtcgatgacataaccgaccag
cttcacagggctggcttttcaagatcgggaaacgaaagggtctacaatggaagaacagga
gagatgatgcgttcactcatcttcatggggccaaatttctaccagagactcatccacatg
tcggaggacaaagtcaagttcaggaacaccggaccagttcacccactcacgcgccagcca
gttgcagacagaaagaggttcggtggaatcaagttcggagagatggagcgagactgcctg
attgctcacggtgcatcagcgaacctgcacgagcgtctgttcactctgagtgactcttca
cagatgcacatctgcaggaactgtaaaagcgcagcgaacgtgatagagagggtggcgagc
agtggaagaaggatcagaggaccgtattgcaggctgtgcgagtctccggactatgtggtg
atggtgaacgtgccgtatggagctaagcttctgtatcaggagctgttcagtatgggcatc
tgtctcaacttcgaaaccaacctctgctga

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