KEGG   Brassica rapa (field mustard): 103869658
Entry
103869658         CDS       T03449                                 
Name
(RefSeq) nuclear exosome regulator NRDE2
  KO
K26109  nuclear exosome regulator NRDE2
Organism
brp  Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:brp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:brp03019]
    103869658
Messenger RNA biogenesis [BR:brp03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     103869658
SSDB
Motif
Pfam: NRDE-2 HAT_PRP39_N HAT_Syf1_CNRKL1_N
Other DBs
NCBI-GeneID: 103869658
NCBI-ProteinID: XP_033147252
LinkDB
Position
A05:21996108..22000926
AA seq 1138 aa
MWKTPEKGDGEQNTTGLFPLFPTQANSVSAISSAPQWLRNASFTTDLSVIDAAPSTAPSL
PDVEASEEEEEGDAYRNNTEANQPRVYDLIEEEEGSESDDDDKAKKKKKKKRKRDSDEYY
TKPAKDYYLDTRPDPDNLAYGSIYRMNVPRYKLDNSQRGFESGSTKLYLRNRRGSMLEAE
IDVNSLDGKAKSDNRYWYAKNAAMERNKNFRRIRLSASSREAVDSCFDRFIPLEEGEAVQ
ESEEEDVESKESVVGTSWEDEVLNKTREFNRQTREHPHDEKAWLAFADFQDKVSSMQSQK
GVRLQTLEKKISILEKAFELNPDSEELLLALLKAYRSRDSADVLISRWEKALMQNSSSYK
LWREFLRVVQGEFSRFKVSEVRKMYSYAIQALFSACSKRHRQMDATSEPVDSALIQQELV
LVDMLVSLCRFEWQAGYRELATALFQAEMEYSIFSPSLLLSEQSKLRLFEHFWSSNGARV
GEEGAFGWSLWLEKEEEQRQKMLKEESSDDNDVGGWTGWTEQLSDRKEDSSIASANTGEG
DVNREGLDEEMEDENGMPEDDTEAMLKLLGIDVDAAASDEIKDTSTWVKWFEEEVSRDQN
QWMPTRKAGELSSVDEMGEREDEEQLSSLVLYEDINGYLFSLRSNEARLSLVYQFVDFFG
ANISPWTSSNSLWWIEKINSLETLSDSMLENLRNVHECLSKSDSANGFSLGSLLGSNSDI
SMRTEMMKFLRNAILLCLNVFPRNYILEEAVLVAEELFVTNMKTCEVATTPCQALAKRLL
KSDRQDLLLCGVYAQREAASGNMKHARRIFDMALTSICGLPKELQDNSPLLYLWYAESEV
ANSSGSSLETESSSRAMHILCYLGSGLAYVPYSSQPSSMQILRARQGFREKLKKIQSLWS
HGVTDDQSAALVCSAAVFEELTNDLSGAVEILEHMFSSVLPGRRSQSHQLEILFNYYVRM
LQRHQDDLTLSKLWNPISEGMQLYPLSPELYQALIDICNHRMTSHRLRMMFDDYSRKTPS
VVVWLFALSYELSRGGSLHRIRGLFERALAQDTLNSSVILWRCYIAYEIDIAHNPSAARR
IYFRAINACPWSKKLWLDGFGKLSTVLTAKEMSDLQEVMRDKELNIRTDIYEILLLQG
NT seq 3417 nt   +upstreamnt  +downstreamnt
atgtggaagacaccagagaagggcgacggcgaacagaataccacaggcttgttcccgctc
ttccctactcaggcgaactccgtctctgctatttcatctgctcctcaatggcttcgcaac
gccagcttcacgacggatctctccgtcatcgacgccgcaccttcgacggctccttcccta
cccgatgtcgaggctagcgaagaagaggaagaaggagacgcttatagaaacaatactgaa
gctaatcagcctagggtttacgatttgattgaagaagaagaaggatccgagtctgatgac
gacgacaaggcgaagaagaagaagaagaagaagcggaagagggattctgatgagtactat
acgaagcctgccaaggattattacttggatactcgtcctgatccggataatcttgcttat
ggctccatctacaggatgaatgttcctcgttataaacttgataattctcagagaggtttt
gagtcaggttctacgaagctttatctaaggaataggcgtggttctatgcttgaagcagag
attgatgttaattcattggacgggaaagcaaagtctgataacagatactggtatgcaaag
aatgcagccatggaacggaacaagaatttcaggcgtattcgtttatctgcttcttctaga
gaggctgttgattcgtgctttgatcgtttcattcctctggaggaaggtgaagctgttcaa
gaaagcgaggaggaagatgtggagtctaaagagtcagtggtgggaacgtcgtgggaggat
gaggtgttgaataagacccgagagtttaacagacagacgagggaacaccctcatgatgag
aaggcgtggctggcatttgctgattttcaagataaggtttcaagtatgcagtctcagaaa
ggtgttcgcttgcagactttggagaagaagattagtatacttgagaaggcttttgaactg
aacccagatagtgaagaactgttgcttgcgcttctcaaggcgtaccgaagtagagacagc
gcagatgtgctgatcagtaggtgggaaaaagcacttatgcagaactcctcgagctacaag
ctgtggagggagtttctacgtgttgttcaaggggagttctccagatttaaagtatcagaa
gtgaggaagatgtattcttatgcaatccaggcactcttttctgcttgcagcaagcgacat
aggcagatggatgcaacatctgaaccagtggattctgctctcatccagcaggaacttgtt
ctagtggatatgctagttagcctctgcaggtttgaatggcaggctggttaccgggagctg
gccacagcgttatttcaagctgaaatggaatatagcatcttttctccatctttgttgcta
agtgaacagagtaaattaagactgtttgagcacttttggagcagtaatggtgctagagtt
ggagaagaaggagcttttggatggtctttgtggttggagaaagaggaggaacaaaggcaa
aaaatgttgaaagaggaatcttctgatgacaatgacgtaggcggttggacaggttggaca
gagcaattgtcagataggaaagaagacagtagtattgcttcagctaacactggagaaggt
gatgttaatcgggagggcctggacgaagagatggaagacgagaatggcatgcctgaagat
gacactgaagctatgttaaagctattaggcattgatgtcgatgctgcggccagtgatgag
attaaagatacttcaacatgggtcaaatggtttgaagaagaggtttctcgagatcaaaat
caatggatgcctactcgaaaagctggtgaactctcaagtgttgatgaaatgggcgagaga
gaagatgaagagcaactgtcaagtcttgtactatatgaggatataaatggatatctattt
tcattacgttcaaacgaggcgcgcttatctctggtataccagttcgttgatttcttcggt
gcgaatatctccccatggacatcaagcaacagtttgtggtggattgagaaaataaatagt
cttgaaacattgtcagattctatgctggaaaatttgagaaacgttcatgagtgtttgtcg
aaatcagatagtgccaacggtttcagcttgggatctcttttaggtagcaacagtgacata
tctatgcggaccgagatgatgaagtttctccgcaatgccatcttgctttgtttgaatgtt
tttccgcgaaactacattttggaagaagctgtgcttgttgcagaagagctatttgtaaca
aacatgaaaacatgtgaagtcgcaacaaccccatgccaagctttggccaaacgtctcctg
aaaagtgaccggcaggatctactactttgtggagtttatgctcagcgagaagctgcttct
ggaaatatgaaacatgcaagaagaatctttgacatggctctgacttctatctgtggcctc
cctaaggaactacaggataactctccattgctatatttatggtatgccgaatcagaagta
gccaatagtagtggcagcagtctagaaacagaatcatcatctcgtgctatgcacattctg
tgctatctgggaagtggtctagcgtatgttccttatagttcccagccttcaagcatgcaa
atccttagagcacgccaggggttcagagagaagcttaagaagatacagtcattatggtct
catggtgtcacagatgatcaatcagcagcgcttgtttgttcggcagctgtatttgaggag
ctaacgaatgacctttcgggtgctgttgagatcctggaacacatgttcagttccgttctt
ccaggaagaagaagtcaaagtcatcaacttgaaatcttgttcaattattacgtgagaatg
cttcagaggcatcaggacgacctaactttgtcaaaactgtggaaccccatatcagaggga
atgcaactgtatcctctcagtcccgagctttatcaagctttaatagacatctgtaatcat
cgtatgacatcccatagactgagaatgatgtttgatgactactcccgcaaaactccatcc
gtagttgtttggctatttgcgctttcttatgagttgagtagaggaggctccctacacagg
atccgtggattgtttgaaagggcattggcacaagatacactgaacagctcggtgattcta
tggcgttgctacattgcatatgaaatcgacatcgcacacaatccatcagcagctaggagg
atttacttccgagctataaatgcttgcccatggtcgaaaaaactatggctggatgggttt
gggaagctgagcacagtactgacggcgaaagagatgtcagatttacaagaagtgatgcga
gacaaggaactcaacattaggacagatatttacgagattcttcttttgcagggttga

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