Brassica rapa (field mustard): 103869936
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Entry
103869936 CDS
T03449
Name
(RefSeq) protein SPA1-RELATED 3 isoform X1
KO
K26557
protein SPA1-related 3/4
Organism
brp
Brassica rapa (field mustard)
Pathway
brp04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
103869936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
brp04121
]
103869936
Ubiquitin system [BR:
brp04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Multi subunit type E3 associated proteins
103869936
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_1st
Beta-prop_EML
Pkinase
Beta-prop_CAF1B_HIR1
Beta-prop_WDR35_TULP_N
Beta-prop_WDR75_1st
Beta-prop_Vps41
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_DCAF12
WD40_RFWD3
WD40_like
PK_Tyr_Ser-Thr
Beta-prop_RIG_1st
WDR54
Motif
Other DBs
NCBI-GeneID:
103869936
NCBI-ProteinID:
XP_009146265
LinkDB
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Position
A05:23186479..23190259
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AA seq
802 aa
AA seq
DB search
MEGSSNSNSRGFFNTSGVSDRNTERVTARSKPSLSHVDEYVRSVFGSSTRKSFEEGSLGT
DDPFVRSLEWGDVSLRQWLDKPERSVDVFECLHVFRQIVEIVNVAHSQGIVVHNVRPSCF
VMSSFNHVSFIESASCSDSGSADSLEDDPVSHKKREDAGSYNKILERQVEKLEEEKKQPF
PMKHVLAMETSWYTSPEEEFGSPSTCASDVYRLGVLLFELFCPVPSREEKSRTMSSLRHR
VLPPQILLKCPKEASFCLWLLHPEPSCRPSMSDLLQSEFMTEPRDNLEEREAAIELRDKI
EEQESLLEFLLMIQQRKQESAYRLRDTVSLLSSDIEQVAKRQLVLKQKGSSFSDLSFPEE
PSTLLASRKRFRQVIPPEETNDEESLFLESSRLMRNFKMLETVYFLTRRRQLKASASGKS
LTRHSQLSSENGRGSEKSSVSNSAAPKDLSQNDSRQGGWIDPFLEGLCKYLSFSKLRVKA
DLKQGDLLNSSNLVCSLAFDRDGEFFATAGVNKKIKIFECDSIVNNNRDIHYPVVELASR
SKLSSACWNSYIKSQIASSNFEGVVQIWDVSRSQLVTEMKEHKKRVWSIDISSADPTLLA
SGSDDGTVKLWSINQGATIGTIKTKANVCCVQFPSDSGRSLAFGSADHKVYYYDLRNPKI
PLSTMIGHSKTVSYVKFVDSSTLVSSSTDNTLKLWDLSMSASGVNETPLHSFAGHTNLKN
FVGLSVSDGYIATGSETNEVFVFHKAFPMPVMSYMFSNTDSTSGLEVDDASQFISSICWR
GQSSTLVAANSNGNIKILEMVA
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atggaaggctcttcaaactccaactctagagggttcttcaacacctctggcgtttcagac
aggaacactgagagagtcactgctcgctcgaagccttctttatctcatgttgatgagtat
gtcagaagcgtgtttggtagcagcacacgcaaatccttcgaagaaggttctttagggact
gatgacccttttgttagatccttggaatggggtgatgtcagcttgagacagtggctggac
aagcctgaacggtctgtagatgtctttgagtgcttgcacgttttcagacaaatcgtggag
attgtgaatgtggctcactctcaaggcattgttgttcataacgttagaccttcttgcttc
gtcatgtcttcgtttaaccatgtttcattcattgagtccgcttcttgctccgactcgggg
tctgctgattccttggaggacgatccagttagccataagaaaagagaggacgctggatcc
tataacaagatcttggagaggcaagtagagaagctagaggaagagaagaagcagccgttt
ccgatgaaacatgtgttagcgatggagacaagttggtatacaagccctgaagaggagttt
ggttctccgagtacttgtgcttctgatgtctaccgtcttggtgttcttcttttcgagctg
ttctgtcctgtgccttcaagagaagagaagtcaagaactatgtctagtttaagacatcgt
gtgcttccgcctcagatactactcaaatgtcctaaagaagcttctttctgcttgtggcta
ctgcatccagagccaagctgtcgaccatcaatgagtgacttgctgcaaagcgagtttatg
accgaaccaagagataatctggaagaacgtgaagcagcaatagagcttagggacaaaatc
gaggaacaagagtcgttactcgagttcttgttgatgattcaacagagaaagcaggagtct
gcttatagattgagggatacagtttcacttctttcttcagacatagagcaagttgcgaag
agacagttagttttgaagcaaaagggaagctcattctctgatctcagcttccctgaagag
ccttcaacattattggcttcaagaaaacggtttagacaagtgattcccccagaggaaacc
aatgatgaggagagcctgtttcttgaaagctccaggttgatgagaaacttcaagatgcta
gaaaccgtctactttctaacaaggcgcaggcaactgaaagcttctgcttcagggaagtcg
ttaactagacattcacagttaagcagcgaaaacggaagaggttcggagaaaagctcagta
agcaactctgcagcacccaaagatctttcccaaaatgattcaagacaaggagggtggata
gaccctttccttgagggtttgtgcaagtacttatcattcagtaagctcagagtgaaagca
gatttaaaacaaggagacttgttgaactcttctaaccttgtttgctcccttgcgtttgac
cgtgatggagagtttttcgccactgctggtgtcaacaagaagatcaagatcttcgagtgt
gactcaattgttaacaataaccgggacattcactatccggttgtggagttggctagccgg
tcaaagctgagcagtgcgtgttggaacagttacataaagagtcagattgcatcaagtaac
tttgaaggcgtggttcagatatgggatgtttcaagaagccagttggttacagagatgaag
gagcacaagaagagagtatggtccatcgatatttcatcagcagaccctactttgctggct
agtggaagcgatgatggaaccgttaagctatggagtatcaatcagggagctaccattgga
accatcaagacaaaggctaatgtatgttgtgtccagtttccatcagactctggccggtct
ttagcatttggttctgcagatcacaaagtgtattactatgatcttaggaatcccaagatt
cctctgagcacaatgattggtcatagtaagacagtgagttatgtcaagtttgtggattcg
tctactcttgtgtcttcttctactgataacacgctgaagctttgggacttatccatgtct
gcctctggtgttaacgaaactcctcttcattcatttgctggacacactaatctaaagaac
tttgtcggcttatcggtctctgatgggtatatagctacaggctcagagactaacgaggtt
ttcgtgttccacaaggcattcccaatgccggttatgtcgtacatgttcagcaacactgac
tctacatctggtctagaagttgatgatgcctcacagttcatatcttccatctgctggcga
ggacagtcatctaccttagtcgctgctaactccaatggcaacatcaagattctggaaatg
gtggcatga
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