Brassica rapa (field mustard): 103870068
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Entry
103870068 CDS
T03449
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103870068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103870068
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103870068
mRNA degradation factors
5'-3' decay
Lsm complex
103870068
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
103870068
NCBI-ProteinID:
XP_009146415
UniProt:
A0A397ZL22
A0A8D9GCS1
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All DBs
Position
A05:complement(23824266..23825925)
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AA seq
128 aa
AA seq
DB search
MSWAGPEDIYLSTSLASYLDRKILVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQ
YCDIPLGLYVIRGENVVLIGDLDTEREELPPNMIRVSETEIKRAQKVEREASELRGTMRK
RMEFLDFD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgggctggtcctgaagatatttacctttcaacttcactcgctagttatctcgac
agaaagattcttgtgctccttagggatggtagaaagctaatgggaaccctccgttcattt
gatcaatttgccaatgcggttctagaaggtgcttgcgagagggtgattgttggtgagcaa
tactgcgacattcctctaggcctctatgtaatccgtggagagaatgttgttctcattggt
gacctggacaccgagagagaagagcttcctccaaatatgatccgcgtatcagagacagag
attaaaagggcgcaaaaagtggagagggaagcgagtgagctgagaggaacaatgaggaag
agaatggagtttcttgacttcgattaa
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