Brassica rapa (field mustard): 103870525
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Entry
103870525 CDS
T03449
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103870525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103870525
03041 Spliceosome [BR:
brp03041
]
103870525
03009 Ribosome biogenesis [BR:
brp03009
]
103870525
03016 Transfer RNA biogenesis [BR:
brp03016
]
103870525
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103870525
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
103870525
Spliceosome [BR:
brp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
103870525
Complex C
U4/U6.U5 tri-SnRNP related factors
103870525
Ribosome biogenesis [BR:
brp03009
]
Eukaryotic type
Pre-60S particles
Helicases
103870525
Transfer RNA biogenesis [BR:
brp03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
103870525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
103870525
NCBI-ProteinID:
XP_009146907
LinkDB
All DBs
Position
A05:complement(25584592..25589423)
Genome browser
AA seq
988 aa
AA seq
DB search
MSTIMESPETLGKRKASSDETPTPEPTTKRRSSQKRACVHEVAVPNGYTPSKEEAIHGTL
DNPLYNGDMAKTYPFQLDPFQSISVACLERKESILVSAHTSAGKTAVAEYAIAMAFRDKQ
RVIYTSPLKALSNQKYRELQHEFHDVGLMTGDVTISPNASCLVMTTEILRAMLYRGSEVL
KEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICYLHKQP
CHVVYTDFRPTPLQHYAFPMGGSGLYLVVDENEQFREANFIKMHDTFPKPKSEGKKSANG
KSGGRGGAKGGGGGGGDSDVYKIVKMIMERKFQPVIIFSFSRRECENHALSMSKLDFNTD
EEKSTVEEVFNNAMLCLNEEDRSLSAIEMMLPLLQRGIAVHHSGLLPVLKELVELLFQEG
LVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRFIGSGEYIQMSGRAGRRGKDERGI
CIIMIDEQMEMDVLKDMMLGKPAPLLSTFRLSYYTILNLLSRAEGQFTAEHVIKHSFHQF
QYEKALPDIENKVTKLEEEAAILDASGKAEVAEYHKLKLDIAPLEKKLMSEIIRPERVLC
FLDTGRLVKIREGGTDWGWGVVVNVVKKTSVGTSSQGGGYIVDTLLHCSTGVSENGAKPK
PCPPRPGEKGEMHVVPVQLPLITALSRLRISVPSDLRPLEARQSILLAVQELSSRFPLGF
PKLHPVKDMNIQDTEIVELVSQIEEAEQKLLAHPMHKSEDDQQMKSFQRKAEVNYEIQQF
KSKMRDSQLQKFRDELRNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNG
TFNDLDHHQVAALASCFIPVDKSNEKVELKNELNRPLQQLKDSARRIAEIQHECKLEIDV
EEYVESTIREGLMDVIYCWSTGSTFAEVMNKTDIFEGSIIRSARRLDEFLNQLRLAAEAV
GENNLASKFAAASESLRRGIMFANSLYL
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgagcacaataatggaatcaccggagacactcggcaagagaaaagcatcctccgacgag
acccctacgccagaacccacgacgaagcgtagaagcagccagaaacgagcttgcgtacac
gaagtcgccgtccccaacggctacacaccgtcgaaagaggaagcgattcacggaactcta
gataatcctctctacaacggagacatggccaaaacctaccctttccagctcgacccgttc
cagagcatctccgtagcgtgcctggagaggaaagaatcgattttggtctccgcccacact
tcagctggtaaaacagctgttgcggagtatgctatcgccatggcctttagagataagcag
agggtgatttacacttctcctttgaaagcattgagtaaccagaagtacagagagctgcag
cacgagtttcacgacgttgggttgatgaccggtgacgtcacgatctcccctaatgctagt
tgcttggtgatgacgactgagattttgagagcgatgctttatagaggctctgaggttttg
aaggaggttgcttgggtgatttttgatgagattcattatatgaaggatagggagagagga
gttgtttgggaggagagtattattttcttgccgcctgctattaagatggtttttctttcg
gctacgatgtcgaatgctactgagtttgcggagtggatttgctatctgcataagcagccg
tgtcacgtggtgtacacggactttaggccgacgcctctgcagcattatgcttttcctatg
ggtgggagtgggctgtaccttgtcgttgatgagaatgagcagtttagagaggctaatttc
attaagatgcatgatactttcccaaaaccaaaatctgaggggaaaaagagtgctaatggc
aaatcaggtggtaggggcggcgctaaaggtggtggcggcggtggtggtgattctgatgtt
tacaaaattgtaaagatgatcatggaaagaaagtttcaaccagtcatcatcttcagcttc
agtaggagggaatgtgagaatcatgcactgtcaatgtcaaaactcgattttaatacggat
gaagagaagtcgactgtggaagaggtattcaataatgctatgctgtgccttaatgaggag
gatagatctttgtctgccattgaaatgatgctgccgctgctccaacgtggtattgctgtc
caccattctggtcttctccctgtcctcaaggaattagtggaacttcttttccaagaagga
cttgtaaaagcgcttttcgccacagaaacttttgctatgggtttgaacatgcctgcaaaa
actgtagtgtttactgctgttaagaagtgggatggtgacagccatcgtttcattgggtct
ggtgaatatatccagatgagcggcagggctggacgtcgtggaaaggatgaacgtggtatc
tgcattattatgattgatgaacagatggaaatggatgtactcaaggacatgatgctgggc
aaaccagcccctttgcttagtacttttaggttgagttactacacaattttgaatctattg
agtcgtgccgaaggacaatttacagctgagcatgttataaagcactcgttccaccaattc
caatatgaaaaggctttaccggatattgagaataaggtgaccaaacttgaagaggaagct
gccatccttgatgcttctggaaaggcggaggttgctgagtaccataagctaaaacttgac
atagctccactggaaaagaaacttatgtcagaaataataaggcctgaaagggtgctttgt
tttcttgatactggtcggctggttaagatacgagaaggtggaacagactggggctgggga
gttgtagttaatgttgttaaaaaaacttccgttggaacctcttcacaaggtggcggatat
atagtggatactctgcttcattgctccactggtgttagcgagaatggtgcaaagccaaaa
ccgtgtcctccccgtccaggggaaaagggtgagatgcatgtggttcctgttcagctacca
ttaatcactgctttgagtagactaaggatatcggttccgtctgatcttcggccactagaa
gcaagacagagcatactgcttgcagtacaggagttgtcgagtcgcttccctttagggttc
ccaaaactccatccagtcaaggacatgaatattcaagatacagagatagttgagctggtc
agccaaattgaagaagctgagcagaagttacttgcgcatccgatgcacaagtctgaagat
gatcagcaaatgaagagtttccagaggaaagcggaggtgaattatgaaattcagcagttc
aaatcgaaaatgcgtgattcccagcttcaaaagtttagagatgagcttaggaaccgttct
cgggtattaaagaaacttggacacattgatgctgatggtgtcgtccagttaaagggacga
gctgcctgcttgatagacacaggggatgaactgcttgtcactgaactgatgttcaatggt
actttcaatgatctggatcaccaccaagtagctgccctcgcaagctgtttcattcctgta
gataaatcaaatgaaaaggtagaactaaaaaatgaactcaatagaccgttgcagcagctc
aaagatagtgcacggagaattgcagagatacaacatgaatgcaaactggaaattgacgtt
gaagagtatgtagaatccaccatcagggaaggcctgatggacgttatctactgttggtca
acgggctcgacctttgcagaggttatgaataagactgacatattcgagggaagtatcatt
aggagcgctagaagactcgacgagtttctgaaccagcttcgacttgcagcggaagcagtt
ggagagaacaatttggcgagcaagtttgcagctgctagcgagagcttgcgaagaggtatt
atgtttgcgaactcgctttatttataa
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