Brassica rapa (field mustard): 103870621
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Entry
103870621 CDS
T03449
Name
(RefSeq) polygalacturonase QRT2-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp00040
Pentose and glucuronate interconversions
brp01100
Metabolic pathways
Module
brp_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103870621
Enzymes [BR:
brp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
103870621
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
AbiEi_3
Motif
Other DBs
NCBI-GeneID:
103870621
NCBI-ProteinID:
XP_009147011
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Position
A05:complement(25948832..25951835)
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AA seq
438 aa
AA seq
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MYQKTIILLTILSASLHFCSSSYPFDPRYDQSMSPDLYLETNHLHGHITRNNHMKNRHGY
APASSPRAFNVKSFGAKANGNDDSQAFKKAWNAACSSTGTVYVVVPKSRAYTLKSVKFSG
PCKSSLIVFKIYGKIEAWKDPSAYKERRLWIVFEAVNNLRVEGGGRIDGNGNKWWPNSCK
INPNLPCLGAPTAVTFVECKNLMVSNIRLENAQQMHMTFQDCENVKALNLMVTSPGNSPN
TDGIHVTGTRNILIQDSIIRTGDDCISIVSGSENVRATGITCGPGHGISIGSLGANNSEA
YVSNVVVNKATLIGTTNGVRIKTWQGGHGVAKNIIFQDIIMKNVTNPIIINQDYCDRVES
CPQQKSAVQVSNVLYKNIQGTSSRPVAVKFECSKSIPCQGISMQNVKLVDQTQQDVVSTA
SCSNVKLDTKGHVSPICT
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgtatcaaaagaccataatcttattaacaattctctcagcgtctcttcatttctgttcc
agcagctacccatttgatcctagatatgatcagtccatgtctcccgatttgtatcttgaa
accaatcatctacatggtcacattacacgtaacaatcacatgaaaaatcgccatggatat
gctcctgcatcttctcctcgagcttttaacgtcaaatctttcggtgctaaagccaacgga
aacgacgattctcaggcattcaagaaagcttggaacgcagcttgttcatcaaccgggaca
gtttacgtcgtggttccgaaaagtagagcttacactcttaagtcggtcaaattctccggt
ccgtgcaaatcatcattgattgtttttaagatttacggaaagattgaggcatggaaagat
ccatcagcctacaaggaacgtaggctctggattgtttttgaagctgtaaataaccttcgt
gttgaaggaggtggacgcatcgacggtaatggaaataaatggtggccaaattcttgcaag
atcaatcctaatcttccatgcctgggtgctccaacggcggttacgtttgtggagtgcaag
aacttgatggtaagtaacattaggttggaaaacgcacagcaaatgcatatgacgtttcag
gattgcgaaaacgtgaaggctttgaatcttatggtcacctctccgggtaatagtcctaac
actgatgggattcacgttaccggaactcgcaatatcctcattcaagattctatcatccgt
actggtgatgattgtatatcgatagtgagtgggtcggagaatgtgagagcgacgggcatt
acatgcggaccaggtcatggaatcagcattgggagtttgggagcaaataactcagaagca
tatgtttcaaatgtggtggtcaacaaagcgactcttataggaaccactaatggtgtgaga
atcaagacttggcagggaggacatggagtggcaaaaaatatcatattccaagacatcata
atgaaaaacgtcacgaacccaataatcatcaaccaggactattgtgatcgtgttgaatca
tgtccccaacagaaatctgcggtgcaagtaagcaatgtgttgtacaaaaacatacaaggg
acgagctcaagacccgtagctgttaaatttgagtgcagcaaaagcatcccatgtcaaggc
atttcaatgcaaaacgttaaactagtcgaccaaactcaacaagatgtcgtctcaacagct
tcatgctccaatgtgaagctggacactaaaggacacgtttctcctatttgcacttga
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