Brassica rapa (field mustard): 103870639
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Entry
103870639 CDS
T03449
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103870639
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103870639
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
103870639
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
103870639
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
DUF1223
Motif
Other DBs
NCBI-GeneID:
103870639
NCBI-ProteinID:
XP_009147036
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Position
A05:complement(26034492..26036533)
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AA seq
287 aa
AA seq
DB search
MVACSVGEQHFLKGGIAQELRTDGRKRLTYRHTYVKTGVIPQANGSARVRIGGTDVIASV
KAEIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSDLALALQRCLLGGKTGAGA
GINLSSLLIKEGRVCWDLYIDGLVISSDGNLLDALSAAIKAALTNTALPKVQVSAEVADD
EQPEIDISDEEYQQFDTSSVPVVVTLTKVGEHYIVDATEEEESRMSSAVSISVNRGGHIC
GLTKRGGCGLDPSVILDMISVAKHVSESLMNKLDSKISAAEACEDES
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atggtggcgtgttctgttggggagcaacactttctaaaaggtgggattgctcaggaactt
agaactgatggtcggaagaggttgacttatcgccacacctacgtcaaaacaggtgttatt
ccgcaggctaatggttcagcgagagttaggataggtggaactgatgtgattgctagtgta
aaggctgagattgggaggccaagttcgctccaacccgataaaggaaaggttgccgttttc
attgattgcagtccaacagcagaacctaccttcggggggaggggaggtgaggaattgtct
tctgatcttgctttggctcttcaaagatgtcttctaggtggcaaaaccggagcaggcgct
gggataaatttatcttcgcttttaatcaaagaaggaagagtctgctgggacctttatata
gatggccttgtcattagctctgatgggaatctattggatgcactgagtgctgccattaag
gctgctttaaccaacacggctctaccaaaagtccaagtttcagctgaagtggcggatgat
gagcaaccagagattgacatcagcgacgaagagtatcaacagttcgacacttccagtgtc
ccagtcgtagtcacgttaactaaagtgggagagcattacatagttgatgcaacagaggaa
gaggagtctcggatgagctcagctgtgtctatatccgtgaaccgggggggacatatatgt
gggttaaccaaaagaggtggatgtggtttggacccgagcgttatccttgacatgatctct
gtggctaagcatgtgtcagagtctctgatgaacaagcttgattctaagatttcagctgca
gaggcctgtgaagacgagtcttga
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