Brassica rapa (field mustard): 103871044
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Entry
103871044 CDS
T03449
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brp03021
]
103871044
Transcription machinery [BR:
brp03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
103871044
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MID_MedPIWI
Med13_N
Med13_C
Motif
Other DBs
NCBI-GeneID:
103871044
NCBI-ProteinID:
XP_009147511
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All DBs
Position
A06:complement(420307..431149)
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AA seq
1883 aa
AA seq
DB search
MWTNVFRIGGLHHVSWFQFLPSEAELNPTSDTSSRAEQNDVATYLVLSSHLRLQKEGFLS
TWTNSFVGPWDPSQGLYNPDEKIKLWLFLPGRHSSITDKAQAAVSKLRVVASGIWVAPGD
SEEISVAFSQSLRNCIERALSGLSYMRFGDVFSKVSPQNEEYLRRGRLTVEFVFAATEEA
VFVHVIVSAKNVRTLSSGDAERLSRSSLKNSSYRLPVIVSPHGMRGSLTGFCPNDLVKQV
YFSSGNLRSSSGYIGLPPHAGSGSRLINGDHCYVEVTLGCCQNINDNTSQTNSTFAVNVP
QTSVGSKDHRKGHPDIASMCEKKFIYPAEAVLVPILQSAFAKFSLKRFWLQNWIGPSLAG
SSLFMHWAGDFDFFGSSGNKSDGFFEKNGYNSSGSSGNSSISSTSSASSGSGWRMTSRTG
DLDADADSLTCNDDHPKLGSKRPRTGMAESFGQVGTANDQFGWDWDDDDDDDRGVGMDIQ
ALLSEFGDFGDFFENDALPFGEPPGTAESHSLILPSDSADVGSSPMDTMDVSDQIVLPVG
FSSFESFNPAPPIIDEGLIKSQEVLNNSVTSVSAPSNQMLSSSNSEFDHLMKAEAMMTFA
PEYGAVEAPMSEISSTSFKSPYLPKSHKVESSNSRTSSYVYGPTPPATDSDGAVDKILLG
SKAYIGNDGRTLYTKVEGRKGRYDKLPTLISDNNSKKEGVSQLKYSNYNASSAVKIVQGK
KTDGISAVVSTLLSSKTLLATDVGSVMFQAFMYRMRHKAISSKHSSPVSLSRLSGNFFLN
QVPNEPSSLTDNVSGRNEIYKKEVPTRIAGDFDGGMLDSHMSAPVGVWRTVSVPKTAKPA
SSPNIEAGSSLPHSSFSENSLLSYGQRQPLQELLDGIALLVQQATSFVDLALDSDCGDGP
YGWLALEELWRRELSCGPSAGHAGCGGTLASCHSLDIAGVKLVDPLSAEVFPSSVITLLQ
SDIKTALKSAFGQSDGPLYVTDWCKGRNQSMDGVSISEGSTAESVLSEVSNAIDGGKGEE
SAQSQDIYSSELLRPTLFVLPSPSILVGYQDDWLKVSTNSLPHWEKAPFEPYALPKNMNY
TVVCPDIDPLTSAAVDFFQQLGTVYETCRLGTHLPQILGNQMETDAGRLSSSGFVLLDCP
QSMKIESNNTSLLGSLSDYFLSLSNGWNVNSYLKSLSKALKGLKLGSGLYTNQKEGSATP
CMVVYIVCPFPDPSAVLRTVVESSIALGSGIKPDRDRRSLLNSQVARAFGSSAAVDEASI
SHIPVLSGFSVPKLVLQVVSVDSIFRITSPSFNELVILKDTAFSVYNKARRISRGMPNDA
FLSSSLSNRSSSALASVNSISGIWKDCVSSRMTGSTHPRDGDIDGSIRTSSWDSSWQITR
SGGVSCDSNRNGDFYINEEIFYLFEPLFILSEPGSVDRGVSPTFGGLGSESSKPIPEDGG
RGSGLGVNSMEGTSSQGDASQVEGKAVPSLHCCYGWTEDWRWLVSIWTDARGELLDTHIF
PFGGISSRQDTKGLQCLFVQVLQQGCQILQACSSPDSGSFKPRDFVITRIGSFFELEYLE
WQKAIYTAGGPEIKKWPIQLRRSAPSGVATNSNGPSLQQHDLSLIQERASSTSTLYGSHS
KPSTFVKGGMGHSAGRKQTMGGQTISGTPRGLFQWVHSISFASISLDHSLHFVLPAELVS
PGGGQSSTGMSAANYIEGFTPVKSLGSTAFSYMMIPSPNMRFLHPSPLQLPTCLTAESPP
LAHLLHSKGCAIPLSTGFVVSKAVPSMRKDSRINVKEEWPSVLSVSLIDYYGGYDNAHDK
VLQGIMKQGGGGTKETRDFEVESHLILESIAAELHALSWMTVSPAYLDRRTALPSHCDVV
LRLSRLLHFADKERSRLPDKSGV
NT seq
5652 nt
NT seq
+upstream
nt +downstream
nt
atgtggaccaatgtcttcagaattgggggtcttcatcacgtttcttggtttcagtttctt
cctagtgaagctgagctcaatcccacctctgatacaagttcaagagctgagcagaatgac
gttgcaacatatcttgtgctttcatctcatctgcgcttgcagaaggaaggctttcttagc
acatggaccaattctttcgttggaccttgggatccatctcaaggcttatacaaccctgat
gagaagatcaagctttggctttttcttcctggacgtcattcatcaatcactgataaagct
caggctgctgtctcaaagcttagagttgttgcgtcaggaatctgggtagcacctggggac
tccgaggagatatctgttgccttttcacagtctttgcgtaattgcattgaaagagcgtta
agtggactttcttacatgagatttggagatgtgttttcaaaagtcagccctcaaaatgaa
gaatatttgaggaggggccgtcttactgttgaattcgtttttgctgctaccgaagaggca
gtttttgtccatgtcattgtttctgccaagaatgtacggacactttcaagtggcgatgct
gagaggctgtcaaggagttccttgaaaaactccagttataggcttccagtgattgtttct
cctcatggaatgcggggtagcctcactggattctgtcccaatgaccttgtcaagcaagtc
tacttcagttctggaaacttaaggtcttcaagtgggtatattggcctccctcctcatgct
ggtagtgggtcccgtctgataaatggcgatcattgttacgtggaagttacacttggttgc
tgccaaaatataaatgacaacacaagtcaaactaattcaacctttgcggtgaatgttcct
caaacatcagttgggagtaaagatcaccggaaaggacacccagatatagcatcgatgtgt
gaaaaaaagttcatatatccagctgaggccgtgcttgtgccaattttacagtcggcattt
gctaaattttctttgaaaagattttggcttcaaaactggataggaccatctctagcaggc
tcatcgttatttatgcactgggctggtgattttgacttctttggatcgtctggaaataag
agtgatgggttctttgaaaaaaatggctataatagcagtggcagtagcggtaatagcagc
attagttcaacaagtagtgcttctagtgggagtggttggagaatgacttcaagaactggt
gaccttgatgcggatgcagattctttgacttgtaatgatgatcacccaaaattgggttcc
aagcggccgcgaacagggatggcagagtcattcggtcaagtaggtactgcaaatgatcaa
tttggttgggattgggatgatgacgatgatgatgatagaggagttggcatggatatccaa
gcacttctttcagagtttggagactttggtgacttctttgagaatgatgcgttacctttt
ggcgagccgccgggaacagcagagtcgcattccctcatacttccttcagattctgctgat
gtaggttctagtccaatggatacgatggatgtatcagaccagattgtgttgcccgttggg
ttttcgtcttttgagagcttcaatcctgctccccctatcattgatgaaggccttatcaaa
agtcaagaagtcctcaacaacagtgtcacttcagtttcagctccttctaatcaaatgtta
agctcttctaacagtgagttcgatcatttgatgaaagcagaagctatgatgacctttgct
cctgagtatggagctgttgaagcacctatgagcgagatttcttcgacgtctttcaaaagc
ccatatcttcccaaatctcataaagtggagagttcaaattcaagaacgagtagctatgtt
tatggacccaccccacctgccactgattctgatggagcagtcgataagattttgcttgga
tcaaaagcatacattggtaatgatggcagaactttgtacactaaggtagagggcagaaag
ggccggtatgataagctacctactttaatcagtgacaacaatagtaaaaaggagggtgtg
tctcagttaaaatattcaaactacaatgcttctagtgctgttaagatcgtacaggggaaa
aagactgacggtatatctgctgttgttagtactttattatcttcaaagaccttgctggca
acagacgtgggaagcgttatgttccaagccttcatgtataggatgcggcacaaagccatt
tcttcgaagcacagttctcctgttagtctgagtaggcttagtggaaacttcttcctgaac
caggtgccaaatgagccaagtagtctgacagacaacgtatctggaaggaacgagatatat
aagaaagaagtacctactagaatagctggagatttcgatggaggaatgttagacagccac
atgagtgcaccagttggcgtgtggcggactgtttcagtcccaaaaacagcaaaacctgct
agctcgccaaacattgaagcaggctcatccttgccccatagttcatttagcgaaaacagt
ttgctttcttatggacaaaggcagccattgcaggagcttctagatggaatagcgctactt
gtacagcaagctacttctttcgttgatttagctctggattcagattgtggggatggacct
tatggctggcttgcactggaagagttgtggagacgggaactgtcgtgtggaccctctgct
ggccatgcaggctgtgggggaactttggcttcctgccattctctggacattgctggtgtc
aagctagttgacccactctctgctgaggtttttccttcctctgtcattactctactgcaa
tctgacatcaagacagctctgaaatccgcatttggtcagtcagacggcccattatatgtc
acagattggtgcaagggccgaaatcaatcgatggatggagtatctatttccgagggatct
actgccgagtcagtcctgagtgaagtgtcaaatgcaatagatggtgggaaaggagaggag
tctgctcagagccaagatatatacagttcagagttactccgacctacactttttgttctt
ccatcaccctctatacttgtcggataccaagatgactggcttaaggtttcaaccaactcc
ttgccacattgggaaaaggcccctttcgagccatatgctttgccgaaaaatatgaactat
actgttgtatgcccggatatagatcctttaaccagtgctgctgttgatttcttccaacaa
cttggaactgtttatgaaacgtgcagactgggaacccatttgccacagatcctaggaaat
caaatggaaactgacgctggaagattatcctcgtcaggatttgttctgcttgattgccct
caatcgatgaagattgaaagcaataacacgtcgcttctgggatctctcagtgattatttt
ctctccttgtcgaatgggtggaatgtaaatagctatctgaagtctttgtcaaaagcgctg
aaaggtcttaagcttgggtctgggctttacacaaaccagaaagaagggtcagctactcca
tgcatggtagtgtacatagtgtgtccatttcccgacccttcggcagttttaaggacagtc
gttgaatcgtctatagcacttggatcagggataaagccagatagagacaggagatcgtta
cttaatagtcaggttgcaagggcatttggtagttctgctgctgtagacgaagcatcaata
tctcacattccagtgctttcggggtttagcgtccctaagctagttctacaagtggtgtct
gttgattctattttccggataacaagtccaagctttaatgagcttgtcatcctcaaggat
actgccttttctgtctacaataaagctcggcgaatttcaagaggaatgcctaatgatgca
tttctctcatcatcattatctaacagatcctcttcagccttggcttcagtgaattctatc
tcaggaatctggaaagactgcgtcagttctcgaatgacaggttctacacatccaagagat
ggtgatattgatggtagcattagaacgagtagttgggatagtagctggcaaataacaaga
tctggaggagtaagctgcgactcaaacagaaatggagatttttacattaatgaggaaatt
ttctatctatttgaaccgcttttcatcctttccgagcctggttccgtggatcgtggagtt
tcacctactttcggcggcttaggatccgagtcttcaaagccaatacctgaggatggtggc
agaggttcaggacttggcgtcaattcaatggaaggtacaagctcccagggggatgcatca
caggttgaagggaaggctgttccaagcttacattgctgctacggttggacagaggactgg
agatggcttgtaagcatctggactgacgccaggggtgaattgcttgacacacatatattc
ccctttggtgggattagcagtagacaggatacgaaagggctgcagtgtctttttgttcaa
gttctgcagcagggatgtcagatactacaggcatgttcctcccctgacagtggatctttc
aaacccagggattttgtcattacacgcattgggagtttctttgagcttgagtacctagag
tggcaaaaggcaatttacacagctggaggtcctgagattaagaagtggcctattcaactt
cgacgttctgcaccttctggcgtagccaccaatagcaacggaccttccttgcaacagcat
gatctgagtttgattcaggagagagcctcgtcaactagcacactctatggctctcactca
aaaccatccacctttgtgaaaggcggtatggggcactctgctggaagaaagcaaacaatg
ggtggacaaaccatttctggtactccaaggggtttgtttcagtgggttcacagcatcagt
tttgcttctatttcacttgatcattctctgcattttgttcttccggctgagttggtatct
cctggaggtggccagagcagtactggtatgagtgcagcaaattacattgaaggtttcact
ccagtcaagtctcttgggtcaacggctttctcttacatgatgataccatcacccaacatg
cgctttcttcacccaagtcctcttcagcttcccacatgtttaactgcagaatcacctcca
cttgctcacctccttcacagcaaaggctgtgcaatccccttgtctaccggatttgttgtt
tcaaaagctgtgccttccatgagaaaagactcgagaataaacgtgaaagaagaatggcca
tcagttctctctgtaagtctcatagactattatggtggttatgacaacgctcatgacaaa
gttcttcaaggaatcatgaagcaaggcggtggagggaccaaagaaactagagattttgag
gttgaaagccatctaatccttgagtcaattgcagcagaactccatgctctatcgtggatg
actgttagtccagcatatctggataggcggactgcattgccatctcactgtgatgtggtt
ctcagactgagtcgtctgcttcattttgcggataaagaacgctccaggctaccagataag
tcgggagtttga
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