Brassica rapa (field mustard): 103871444
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Entry
103871444 CDS
T03449
Name
(RefSeq) AMSH-like ubiquitin thioesterase 1
KO
K11866
STAM-binding protein [EC:
3.4.19.12
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
103871444
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
brp01002
]
103871444
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
brp04131
]
103871444
04121 Ubiquitin system [BR:
brp04121
]
103871444
Enzymes [BR:
brp01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
103871444
Peptidases and inhibitors [BR:
brp01002
]
Metallo peptidases
Family M67
103871444
Membrane trafficking [BR:
brp04131
]
Endosome - Lysosome transport
Others
Others
103871444
Ubiquitin system [BR:
brp04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
103871444
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
JAB
USP8_dimer
Prok-JAB
Motif
Other DBs
NCBI-GeneID:
103871444
NCBI-ProteinID:
XP_009147942
UniProt:
M4DQG1
LinkDB
All DBs
Position
A06:2567641..2571531
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AA seq
509 aa
AA seq
DB search
MGSSCEIIDLSTSARRITVDNRISLKFYFRIADNILKQANIFRAEKNVIDLYVMLLRFSS
LALETIPSHRDYRTSLKSNKEYLRMRLLDVLTELEKLKPVVQQRIDELNPKPLPRYSVHA
HPANGTPRWSSAVKPSLTSYDHTKVLNPSGHNFGYMGSRGQQLLNAAPLEERFRKMSVNL
MRPTEETLSKHSILGPGGLRAQWQPPKIDIKVQYPSNIDFAPVEIPSFQRQFVDSKPMIT
NGSNNEPERPVVESTSTPTENIQKNYTEELSSMISFEEPESVNDNHIIRQPSPPPVLAEV
QDLAAGSCHEAIEAECKMDNPLPDESLRSESPLELHIATTMMDTFLRLAKSNTKKNLETC
GILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKQSLFPLGWIHTHPTQSC
FMSSIDVHTHYSYQIMLPEAVAIVMAPQDSSRKHGIFRLTTPGGMTVIRNCDQRGFHAHS
SPADGGPIYNTCTDVYMNPNLKFDVIDLR
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggggtcctcttgcgagatcatcgatctctccactagtgctcggagaataaccgtagac
aatcgtatctctctcaaattttacttcagaatcgcagataatatcctcaaacaggccaac
atattccgggctgagaagaatgtaattgatttatatgtcatgcttctacgtttctcgagc
ttggctctcgagactataccctcccatcgagattacagaacttctcttaaaagcaacaaa
gagtatttgagaatgagactattggatgtgttgaccgagctggagaagttgaaaccagtt
gtacagcaaaggatcgatgaactcaatcctaagcctttacctcgatatagtgtgcatgct
catcccgcaaatggtactccacgttggtcttcggctgtaaaaccatcgttaactagctat
gatcatactaaggtactaaatccttctggacataattttggctacatgggttccaggggt
cagcaactcttgaacgctgcaccacttgaagagcgtttccgaaagatgtcagttaacttg
atgcggccaacagaggaaaccctttctaagcattctatcttgggtccaggtggactccgt
gcacagtggcagcctcccaagattgacattaaggttcagtatccaagcaatatagatttt
gcaccagttgaaatcccaagcttccaacgacaattcgtggatagcaaaccaatgataaca
aacggcagtaacaacgaacctgagaggccagttgtggaatcaacttctactccaactgaa
aatatccagaaaaactacacggaagagctttcatccatgatttctttcgaagaacccgaa
agtgttaatgacaaccatatcatcaggcaaccttcaccacctccagtactagcagaagtt
caagacttggctgctggttcatgtcatgaagcgatagaagcggaatgtaagatggataac
cccttacctgatgagtctctacggtcagagtctcctcttgaactccatattgctacaaca
atgatggatacatttttgaggcttgccaagtcaaacaccaagaagaatctagagacgtgt
ggtattcttgctggttcactaaaaaacagaaagttctatattacagctctcatcatacca
aaacaggaatcaacatctgactcgtgtcaggccacaaacgaggaggagatatttgaagta
caggacaagcaatctcttttcccacttggatggattcatacgcatccgacacagtcttgt
ttcatgtcatctatcgatgtacacacgcactattcataccagattatgttaccggaagct
gtggcaatcgtcatggccccgcaagactcttcaaggaaacatggaatattccggctgaca
acgccgggagggatgacggtgataagaaactgtgaccagcgtggctttcacgcacacagt
tcgccggcagacggaggaccgatttacaatacatgtacggatgtttacatgaacccaaat
ctaaagttcgatgtcatcgatctgagatag
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