Brassica rapa (field mustard): 103871455
Help
Entry
103871455 CDS
T03449
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103871455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103871455
03012 Translation factors [BR:
brp03012
]
103871455
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103871455
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103871455
Translation factors [BR:
brp03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
103871455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
T2SSE
AAA_19
AAA_16
nSTAND3
ATPase
Dicer_dimer
PhoH
Motif
Other DBs
NCBI-GeneID:
103871455
NCBI-ProteinID:
XP_009147952
UniProt:
M4DQF4
LinkDB
All DBs
Position
A06:2607222..2612928
Genome browser
AA seq
1180 aa
AA seq
DB search
MPYYSAIFRGHIKPNAVVGAASMFIQHSSLHLFRTPNLLFSRPSSLVRSLHSQRSRVLSA
KAGRSSLEWRVSNLPYFQKQGYGRIAYNDYESSDESDRDIVGSSQSQQMAGSTLDNIDQW
RFKLTMLLRNREDQEVVSRERKDRRDFDHISAMATRMGLFSRQYSKIIVISKSPLPNYRP
DLDDKRPQREVVLPFGLQSEVDAHLHAFLDQKKMLIPEMPRPNSSESLATNYGNYENPEA
VMQNSLARERILRPRSLQLRSKQQQWVDSPEGQKMVEFRKTLPAYKEKEALLRAISANQV
IVVSGETGCGKTTQLPQYILESEIEAARGAACSIICTQPRRISAISVSERVAAERGEQIG
ESVGYKVRLEGMRGRDTRLLFCTTGVLLRRLLIDRSLKGVTHVVVDEIHERGMNEDFLLI
VLKDLLPRRPDLKLILMSATLNAELFSSYFGGAPAMHIPGFTYPVRAHFLEDFLETTGYR
LTSYNQIDDYGEEKTWKMQKQAQFTKRKSQISSAVEGALEAADFKGYQFRTRDSLSCWSP
DSMGFNLIENVLCHIVKGERPGAVLVFMTGWDDINSLKKQLEAHHLLGDPNKVLLLACHG
SMASSEQRLIFDRPPEGVRKVVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCL
LPSWISKAAARQRRGRAGRVMPGECYHLYPRCVYDAFADYQQPELLRTPLQSLCLQIKSL
GLGSISEFLSRALQPPEALSVQNAVDYLKLIGALDDNENLTALGKNLSMLPVEPKLGKML
ILGAIFNCLDPIMTVVAGLSVRDPFLMPFDKKDLAESARSKFSGRDCSDHLTLIRAYSGW
KEAERTRSGNEYCWQNFLSAQTLKAMDSMRKQFFFLLKEASLIDNVESCSKLSYDEHLVR
AIICAGLFPGVCSVVNKEKSITLKTMEDGQVLLYTSSVNGNVQRIPFPWLVFNEKIKVNS
VFLRDSTAVSDSVLLLFGDKVSSGGFDGHLKMLGGYLEFFMKPSLAYTYLSLKRELDELI
QNKLVNPKLDIQLYDKLMTAIRLLVSEDQCEGRFVFGRKALSPTTTKKLKVVGTQLPNSG
GENDKNHLQTVLARAGHGTPVYKTRQLKNNQFRAMVTFNGLDFMGKPCGSKKNAEKDAAH
EALLWLQGESKSSLNDLNHMSTLLKKDKSKKSARAPARWN
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgccttactactctgcaattttccgaggacatatcaaacctaacgccgtcgtcggtgct
gcctccatgttcatccaacatagctccctccacctctttcggacccctaacttactcttc
agcagaccgtcgtctctagttaggtctcttcattctcagaggtcaagggtcttgtcagcc
aaagcaggtcgttcttcgttggagtggagagtatctaacttaccttactttcaaaagcaa
ggctatggaagaatcgcttacaacgactacgagtccagcgatgagtcggaccgtgacatc
gtcggctcttctcagtctcagcaaatggcgggttcgactcttgataacattgaccaatgg
aggtttaaacttactatgcttctacggaaccgagaagaccaagaagttgtgtccagggag
aggaaagatcggcgtgattttgatcacatctctgcaatggctactagaatgggattattc
agccgtcagtattcgaagatcattgtcattagcaagtctcccttgccaaactatagacct
gatcttgatgataagcgtcctcagagagaggtggttttgccttttggcttacaaagtgag
gtggatgcccatctacatgctttcctggatcagaagaaaatgttgattccggagatgccc
aggccaaatagtagtgaaagcttagcaactaattatggaaactacgagaacccagaggcg
gtgatgcagaatagtctcgccagggaaagaatactccgtcccaggagtctgcaactgagg
agcaagcaacagcaatgggtggattctccggaaggccagaaaatggtagagttccgcaaa
acacttcctgcatacaaagagaaagaagcactattaagagctatttcagcaaaccaggtc
atagtggtttctggagaaactggctgtggtaaaacaacacagcttcctcagtacatatta
gaatctgagatcgaggctgcccgtggagctgcatgcagcatcatatgcacacagcctaga
agaatatctgctatttctgtttctgaacgagtcgctgcagaacgtggtgaacaaatagga
gaatccgttggctacaaagtgaggcttgaagggatgagggggagagacacacgtcttctc
ttttgtacaactggtgttttgcttagaagactacttatagatcgtagcttgaaaggtgtg
actcatgtcgtagttgatgaaattcatgaacgtgggatgaatgaagattttctgcttatt
gtcttgaaagatctccttcctcgtcgacctgaccttaagctgattttgatgagtgccact
ttgaacgctgagctcttttcttcttattttggtggtgcaccagccatgcatatcccagga
tttacataccctgtccgagcccatttcttggaggattttcttgagactactgggtacagg
ttgacatcatataatcaaattgatgattatggcgaggaaaagacatggaagatgcaaaaa
caagctcaattcacaaaaaggaaatcccagatatcctctgctgttgagggtgctcttgaa
gctgcagacttcaaaggataccagtttcgtactagagattctttgtcatgctggagccct
gattcgatgggctttaacctcattgagaatgtgctttgccacatcgtcaaaggagagaga
cctggtgctgtgttggtattcatgactggttgggatgatattaactccttgaagaaacag
ctcgaagctcatcatcttctgggagaccccaacaaagttttgcttcttgcctgtcacgga
tccatggccagctctgagcagaggctgatttttgatagacctccagaaggagttaggaaa
gtagtgctggccaccaacatggctgagacaagtatcaccatcaatgatgttgtatttgtg
gttgattgtggaaaagcaaaagagacgtcttatgatgcgcttaacaacaccccttgtctg
cttccatcttggatctcgaaggcagctgctcgccaaagaagaggaagagcaggtcgtgtt
atgcctggagagtgttatcacctttatcctagatgcgtctatgatgcttttgctgactac
cagcagccagaactcctgaggactccgttacagtctctgtgtctacaaatcaaaagctta
ggacttggaagcatttcagagttcctttccagagcattgcaacctcctgaagctttatca
gtccagaatgctgttgattatctaaagcttattggtgctcttgatgacaacgaaaattta
acagctttagggaagaatttgtcgatgcttcctgtggagcctaaacttggaaaaatgctt
attttaggggctatcttcaattgtcttgatccaataatgacagttgttgctggtcttagt
gtcagagaccccttccttatgccatttgacaaaaaagatctagcagagtcagcgaggtcc
aagttctctggccgtgattgcagtgatcatttgacactgattcgagcgtacagcggttgg
aaagaagctgaaagaacacgttctggtaacgagtattgctggcagaactttctatctgcc
caaactcttaaggccatggactctatgcggaaacaattcttctttctcctcaaggaggct
tctctcattgataacgttgagagttgcagtaagctgagctatgatgaacatcttgtccgc
gccatcatctgtgctggcctgttccctggagtttgttctgttgttaataaggaaaagtca
attacgctcaagacaatggaggatgggcaagtgcttctatacacgagttctgtgaatggc
aatgtacaaaggattcctttcccttggctagtcttcaacgaaaaaatcaaagtcaattct
gtgtttctccgagactccactgctgtatctgattcagtgcttctattgtttggggataaa
gtatcttcgggtggatttgatggtcatctcaaaatgctgggaggatatctagagtttttc
atgaagccctctttagcatatacatacctttctttaaaaagagagctcgacgagcttatt
cagaataagcttgtgaatccaaaacttgatattcaactgtacgacaaactcatgactgcc
attagattacttgtgtctgaggaccaatgtgagggcaggttcgtctttggccggaaagct
ctgagccctacaacgacgaagaagttgaaagtagtagggactcagctgcccaacagcggc
ggggaaaacgataagaaccaccttcagacagtgcttgcccgagcaggacacggaacacca
gtgtacaagacaagacagctgaagaacaaccagtttcgggccatggttactttcaatgga
ctggatttcatgggaaagccatgtggtagtaagaaaaacgcagagaaggatgcagctcat
gaggcgttgctgtggttacaaggcgagtctaagtcgagtttgaatgatcttaaccacatg
tcgacgctcttaaagaaggacaagagtaaaaaatccgcaagggcaccagctagatggaat
taa
DBGET
integrated database retrieval system
