Brassica rapa (field mustard): 103871463
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Entry
103871463 CDS
T03449
Name
(RefSeq) protein PAT1 homolog 2
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103871463
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103871463
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103871463
mRNA degradation factors
5'-3' decay
Decapping complex
103871463
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Orexin
Motif
Other DBs
NCBI-GeneID:
103871463
NCBI-ProteinID:
XP_033143223
LinkDB
All DBs
Position
A1
Genome browser
AA seq
768 aa
AA seq
DB search
MERSDSRYLYHNLARASSSSNNNSTLFDASQYEFFGQSLEEVELGGLYDDADSVLGHADD
GDGYHLFDKREGAGLGSLSEMDDLATTFAKLNRVVSGPKHPGVIGDRGSGSFSRESSSAT
DWTQDNEFTSWLDQQTLEEQAHEPSWSSQPQQPSANPNSLHRTSSYPQQQAQLQHYNSEP
IIVQESTFTSFPTPGNRSQISSPSHIHRAPSLPGSSQLNLPAPNSAFHLSGLSHGPPHYN
SNLARYASCGPTLGNTVQPPHWVTDPGLLLHGDRSGLLHSLVQQQQQQQQLLQLLPRNGF
TSQQLISLQQRQSLAHPAALQSQLYSSCPSPSRQEVREHKHKPSHRSRKNRSGGGLSQQA
SLSSQKSETGLQFRSKYMTSEEIESILKMQHSNSHSSDPYVNDYYHQARLTKKSSGSRVK
TQFCPSHLKDHQSRSSRNSSSSDQQQPQVHVDALGKITLPHVCRPRALLEVESPPGSRHH
LEQEPLVAARVTIEDAFGVLIDIVDLDRTLQCNRPQDGGSQLVRKRQLLLEGLATSLQLV
DPFSKTGQKTKDDIVFLRIATLPKGKKLLTKYIQLLVPGTEIARVVCMAVFRHLRFLFGA
AASETVANLANAVTVCVQAMDLRALSGCLAAVVCSSEQPPLRPIGSPSGDGASVVLVSLL
ERAAQVVKNSNDGLWRASFDEFFSLLTKYCRSKYETIHGQENAAAHVLEVAIKREMPAEL
LRASLRHTSEDQRNFLLNFGRKGSSPPPVSELKTGARGGQVSSESVMA
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atggagagatctgattctagatatctttaccacaacttagctcgagcttcttcatctagt
aataataatagtacactctttgacgcatctcaatatgagttctttggtcaaagtcttgaa
gaagttgaattgggaggtctttatgatgatgccgattctgttctcggacatgccgatgac
ggtgatgggtatcacttgtttgataaaagagagggtgcaggtttgggatcattgtctgaa
atggatgatcttgccacaacttttgctaagctaaacagagttgtttccgggcccaaacac
cctggagtaattggggacagaggatcaggttccttttcaagggaaagttcttctgcaaca
gattggacacaggataatgagttcacaagctggttggaccagcaaacgcttgaagagcaa
gcacacgaacctagctggtcttcacagccacaacaaccatcagctaacccaaactctttg
cacagaacatcctcatatcctcagcagcaagcacaactgcagcattacaatagcgaaccg
atcattgtacaagagtctaccttcacctcttttcctacgcctggaaacagatctcaaata
tcttcaccgagccatatccatcgcgctccttctctccctggtagcagccagctgaacctc
cctgcaccaaactctgctttccatctctcaggattgtcacacggaccaccacactacaac
agtaacttggccaggtatgcctcatgtggtcctactcttggcaacacggtgcaacctcct
cactgggttactgaccctggccttcttctgcacggtgatcgctccgggttgttacacagt
ctagttcaacagcaacaacagcagcagcagctgctgcagcttcttcctcgtaacggtttt
acatcacagcagctgatctcgcttcagcagagacaatctctagctcatcccgccgcgtta
cagtcccagctctacagctcatgcccttccccatcgcgtcaagaagtaagggaacacaaa
cacaagccgtctcacaggagccgcaagaacagaagtggaggaggcctctcccaacaggca
tctctctccagccagaaaagcgaaaccggacttcagttcagatcaaagtacatgacgtca
gaagagattgagagtatcctcaagatgcagcattccaactcacacagcagtgacccttac
gtcaacgattattaccaccaagctcggctaaccaaaaagtcctccggatctagagtaaag
actcagttctgtccttctcatctaaaagaccaccaatctcggtcgtcccgtaatagtagc
agctcagatcagcaacaaccgcaagtccacgtggatgctctcggaaagatcactcttcct
cacgtttgcagaccacgcgctttactagaggttgaatctcctcctggctctcgtcatcat
ctggagcaggagcctcttgttgcagctagagtaacaatcgaagatgcttttggagttctg
atcgatatagttgaccttgataggactctccagtgcaaccgtccgcaagacggtggctct
cagctcgtgagaaagcgtcagcttctcctagaaggcttagcgacttctctccagctcgtt
gatcccttcagcaaaaccggtcagaaaaccaaagacgacatcgtgtttttacgcatagcg
actcttcccaaggggaagaaactgctcacaaagtatattcagcttcttgtccccggcact
gagatcgctagggttgtctgcatggctgtgtttcgccacctcaggtttttattcggtgcc
gctgcatcagagacggtagctaaccttgctaacgcggttactgtctgtgtccaagcgatg
gatctccgagcattgagtggttgtcttgcggctgttgtctgttcctcagagcagccgcct
ctccgtccgataggaagtccctctggggatggagcgtctgttgtgttggtgtctcttctc
gagagagctgctcaagtagtgaaaaactcgaatgatggactgtggagagcctcgtttgat
gagtttttctcgcttcttaccaaatattgtaggagcaagtatgagacgatacatggtcag
gagaatgcagcagctcatgtgttggaggtagctataaagagggagatgcctgctgagctt
ttgcgtgcgagcctacgtcatacgagtgaagaccagcggaactttttgctgaactttggt
cggaaaggttcttcaccaccacctgtgagcgagttgaaaaccggtgcaaggggtggccag
gttagctctgagtctgtcatggcttaa
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