KEGG   Brassica rapa (field mustard): 103871570
Entry
103871570         CDS       T03449                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03030  DNA replication
brp03410  Base excision repair
brp03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    103871570
   03410 Base excision repair
    103871570
   03420 Nucleotide excision repair
    103871570
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:brp03032]
    103871570
   03400 DNA repair and recombination proteins [BR:brp03400]
    103871570
Enzymes [BR:brp01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     103871570
DNA replication proteins [BR:brp03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    103871570
DNA repair and recombination proteins [BR:brp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      103871570
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 DNA_pol_B zf-DPOE zf_DPOE_2 DNA_pol_B_exo2 RNase_H_2
Other DBs
NCBI-GeneID: 103871570
NCBI-ProteinID: XP_009148082
LinkDB
Position
A06:3228491..3243838
AA seq 2180 aa
MSGDNRRWDRKDSRRSNTQKVVKTAEDELESKLGFGLFSEGETRLGWLLTFASSSWEDPD
TGKIYSCVDLYFVTQDGFYFKTKYKFRPYFYAATKEKMELEVEAYLRRRYERQVADIEIV
EKEDLDLKNHLSGLRKKYLKVSFDTVQQLMEVKRDLSHVVERNQAKFDALEAYESILAGK
REQRLQDCLDSLVDLREYDVPYHVRFAVDKDVRSGQWYNVSISSTDVTLEKRTDILQRAE
VRVCAFDIETTKLELKFPDAEYDQIMMISYMVDGQGFLIVNRECVGEDIEDLEYTPKPEF
EGYFKVTNVSNEVELLRKWFSHMQEVKPGIYVTYNGDFFDWPFIERRASHHEIKMNEELG
FRCDHNQGECRAKFVCHLDCFAWVKRDSYLPQGSHGLKAVTKAKLGYDPLEVNPEDMVQF
AMEKPQTMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMVPDEVLRKGSGTLCEMLLMV
EAYKANVVCPNKNQADPEKFYQSHLLESETYIGGHVECLESGVFRSDIPTSFKLDTSAYQ
QLIDNLDRDLEYAITVEGKMRMDSVSNYDEVKEKIKEKLEKLRDCPIREEGPLIYHLDVA
AMYPNIILTNRLQPPSIVTNEICTACDFNRPGKTCLRKLEWVWRGVTYMAKKSDYYHLKK
QIESEFVDAGANIQSSKSFLDLPKVEQQSKLKERLKKYCQKAYRRVLDKPSTEILEAGIC
MRENPFYVDTVRSFRDRRYEYKTLNKVWKGKLSEAKASGNSIKIQEAQDMVVVYDSLQLA
HKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIERIGRPLELDTDGIWCA
LPGSFPENFTFKTIDMKKFTISYPCVMLNVDVAKNNTNDQYQTLVDPVRKTYESHSECSI
EFEVDGPYKAMIIPASKEEGVLLKKRYAVFNHDGTLAELKGFEIKRRGELKLIKVFQAEL
FDKFLHGSTLEECYSAVAAVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGEQ
KSCAVTTAKRLADFLGDTMVKDKGLRCQYIVACEPKGSPVSERAVPVAIFTLSKTEPERM
KFYLGKWCKQRLSSDHKVDIRLIIDWSYYKQRLSSAIQKVITIPAAMQKVANPVPRVLHP
DWLHKKVREKDDKFRQRKLADMFSSANKDGVLDKNHSVAQDDMDDIEDFCKENKPGVKGP
KPIARSYEVNKEQFGREQQESKDPKCDDDISFENIDKNVDYQGWLEVKKRKWKGIVEKKK
KRRLGDQRSLKQIESHEIKKKVTQVRRGVGSFFRRPEEALTSSHWQIIQLVPSPQSGQFF
AWVVVEGLMLKIPLTIPRVFYINSKAPIDGKFPGKCVNKILPHGKPCYNMIEVEIQEEQF
RKESKKLAALLADPEIEGIYETKVPLEFSAICQIGCVCKIDNTAKHRNTQDGWKVGELHM
KTTTECRYLERSIPLLYLYNSTSTLRAIYVLYCHASKLMSAVVVNPYGDKELLPSALERQ
FRDGCQELSLESLSWDGIVFQVDYVDHAEAAEKIIQKAISEYREENSGPTVVVTECPDFN
SIKDGIKALDDFPCVRIPFNGDDNSYQPVSWQRPAAKLAMFRCAAAFQWLDRRISQSRYA
HVPLGNFGLDWLTFTVDIFLSRALRDQQQVLWVSDNGIPDLGGLNNEETFFADEVQQTSL
VYPGAYRKISVELKIHHLAVNALLKSNLVSEMEGGDFLGFEQDVNPRGSSSNVNASFDET
TGCAQAFRVLKQLINSCLTDVCKSRNIYADSILQRLSWWLCSPCSKLHDPALHLMLHKVM
QKVFALLLTDLRRLGATIIFADFSKIVIDTGKFDLSAAKAYCDSLLTAVGNSDIFEWILL
EPVHYWHSLLFMDQYNYAGIQATDDEISPDEVTIEPKWSVARLFPEYIQRDFVIIVAKFI
FDPWKFSLEKKRGSSESLEAQMVEYLKEQIPSSFFNMLVAKINDIVSHMKEIDVSDASRD
SSQAPKRDYTLELIQTICAVMGLDQNVEQDVRVMKRNLLKYINVKEFAAEAEFLDPGPSF
ILPNVACSNCDAYRDLDIGRDPALLTEKEWCCIDSQCGKIYDREQMENSLLQMVRQRERM
YHMQDLVCTRCNQVKAAHLTEQCECSGSFRCKEGGSEFLKRMEIFLDIAKRQKFKLLEEC
TSWILDPTGSWQTNTGRHHS
NT seq 6543 nt   +upstreamnt  +downstreamnt
atgagcggagataatcgaagatgggatcgaaaggactcgcggagatcgaatactcagaaa
gtcgtgaaaacggcggaagatgagctcgaatctaaactcggatttgggcttttctccgaa
ggggaaacgcgcctcgggtggctactcacattcgcatcatcatcttgggaagatcccgat
actgggaagatttatagctgtgtggatctttactttgttactcaggacgggttttatttc
aagacaaagtacaagttccgcccgtacttctatgcagctacgaaagagaaaatggaactg
gaagttgaagcgtacttgagacggcgatatgaaagacaagttgctgatattgagattgtt
gaaaaagaggatcttgatcttaaaaatcatctatctggcctgcgaaagaaatacctaaaa
gtatcatttgatactgtgcaacaattgatggaagtcaagagggatctgtcgcatgttgtc
gaacgaaaccaggcaaaatttgacgcacttgaagcatacgaatccattttggctggaaaa
cgagaacaacgtcttcaagattgcttagactctttagtggacctccgcgagtacgatgtt
ccttatcatgttcgatttgcagttgataaagatgtgcggagtgggcaatggtacaatgtc
agtatttccagcactgatgtcacactagagaagaggacagatattctccagcgcgcagaa
gtccgtgtttgtgcattcgatatagagacaacaaagcttgagttgaaatttccggatgct
gaatatgatcaaattatgatgatatcttacatggtcgatgggcaaggttttctaattgtt
aacagagagtgtgttggcgaagacatagaagatctggagtatacacccaaaccagagttt
gaaggatatttcaaagttactaacgttagcaacgaggttgaactccttcgaaaatggttt
tcccatatgcaagaggttaaacccggtatttatgttacatataacggtgattttttcgac
tggccatttatagaacgcagagcatcccatcatgagatcaaaatgaatgaggagttggga
ttccgttgtgatcataatcaaggtgaatgtcgagctaaattcgtttgccatttagattgt
tttgcttgggtgaaacgggatagctatcttcctcagggaagccatggtctgaaggccgtt
acaaaggcgaaactgggctatgatccactggaagtgaacccagaagacatggttcagttt
gccatggagaaaccacagacaatggcctcctattctgtctctgatgctgttgcaacttat
tacctatacatgacatatgttcacccgttcattttttctctcgcgactatcatccctatg
gtccctgatgaggtcttacgtaaaggaagtggaaccctttgtgaaatgcttctgatggtt
gaggcgtataaggcaaatgttgtatgtcccaataaaaaccaagctgaccctgagaagttc
taccaaagtcaccttcttgaaagtgagacatatattggtggccatgtagagtgcctcgaa
agtggtgttttccgatctgacattccaaccagttttaagctagacacatcggcataccag
caactgatcgataaccttgaccgggatctggagtatgctatcactgtagaagggaaaatg
agaatggattcagtttccaattatgatgaagtgaaggaaaaaatcaaggaaaagctggaa
aagttacgagattgccctatacgtgaagagggacctcttatttatcaccttgatgttgca
gcgatgtatccaaatatcatcttaacaaataggcttcagccaccatcaatagttacgaat
gaaatttgcaccgcatgtgatttcaaccgcccgggaaaaacgtgtcttcgaaaacttgaa
tgggtttggcgtggggtgacatacatggccaagaaaagtgattattaccatctgaagaag
cagattgagtccgaatttgttgatgctggtgcaaatattcagtcttcaaaatctttcctt
gatctaccaaaggtggagcaacaatctaaactaaaagaaagactgaaaaaatattgtcaa
aaggcatatcgacgagtacttgacaagccaagcactgaaattcttgaggctgggatatgc
atgagagaaaatccgttttatgtagacactgttcgaagctttcgagataggaggtatgaa
tacaaaacacttaacaaggtctggaagggaaagttgtcagaggccaaggcaagtggcaat
tcaatcaagatccaggaagcacaggacatggtagtggtttacgattccttgcagctagct
cataagtgtattcttaattccttctatggatatgtcatgcgaaagggtgcaagatggtac
tctatggaaatggctggtgtagttacctatactggagccaaaatcatccagaatgcccgt
ttgcttattgagcgtattgggagaccacttgagttggatacagatggtatatggtgtgct
ctacctggatcttttcctgagaactttacttttaagacgatagacatgaagaaattcacg
atctcttatccgtgtgtaatgcttaatgttgatgtggctaaaaataatacaaatgatcaa
tatcagactcttgtagatcctgtacgcaagacgtacgagtcgcatagtgaatgctccatt
gaattcgaagtggatggaccgtacaaggcaatgattattcctgcatcgaaagaagaagga
gtcttacttaagaagcggtatgctgttttcaatcatgacggaaccttagcagaactcaag
ggatttgagatcaagcgtagaggggagctgaaactcattaaagttttccaggccgagctt
tttgacaaatttctccatggatcaacacttgaagagtgttattctgctgttgcagccgtt
gcaaatcggtggcttgacctactcgataatcaaggaaaagatattgccgacagtgaacta
ctagattatatatcagaatcaagcaccatgagcaaatccttagcagattatggtgagcaa
aagtcatgtgcagtgaccacagcaaaacgcctggctgattttcttggtgatacaatggtc
aaagataaaggactgcgttgccaatacattgttgcttgtgaaccaaaggggtcacctgta
agtgaacgtgctgtccctgttgccatatttaccttatctaaaacggaacctgaaagaatg
aagttttatctgggaaaatggtgcaagcagcgccttagttcagaccataaagttgatatt
cgtttaattattgactggtcgtattacaagcagcgtcttagttcagctatccaaaaagtt
atcaccattcccgctgcaatgcagaaggtggcaaatcccgttcctagggtgcttcatcct
gattggcttcataaaaaggtccgtgaaaaagatgataaatttcgccagagaaaactagct
gatatgttcagctcagcaaacaaagatggtgtgttggacaaaaatcattcggtggctcaa
gatgatatggacgatattgaggatttttgcaaagaaaacaagcctggcgtaaagggacca
aagccaattgcacgttcttatgaagttaataaagaacagtttggacgtgagcagcaagag
agcaaggatccaaagtgcgatgacgatatctcatttgagaacattgacaagaacgtggat
taccaaggttggcttgaagtgaaaaaaagaaaatggaaaggaattgtggagaagaagaag
aaacgaaggttgggtgatcaacgatctttaaagcagattgaatctcatgagataaagaaa
aaagtcacacaggttagaagaggtgtaggttcattctttaggaggcctgaagaagctttg
actagctcacattggcagataatacagctggtcccaagtccacagagcggacaatttttc
gcttgggtggttgtggaaggattgatgcttaaaatcccattgacaatcccaagagtgttt
tacattaattccaaagctcctatagatggaaaatttcccggaaagtgtgtcaacaagatt
cttcctcatggaaagccttgttataatatgattgaggtagagattcaggaagaacaattt
agaaaagaaagcaagaagcttgcagctcttcttgcagaccctgaaattgagggcatatat
gaaacaaaggtgccgctggagtttagtgctatatgtcagataggatgtgtatgcaaaatt
gataacacagccaagcaccgtaacacccaagatggatggaaagttggtgaacttcatatg
aaaactacaactgaatgccgctacctggagcgatcaattccacttctttacttgtataac
agcacctcaacactacgtgctatatatgttctatattgtcatgcatcgaagcttatgtct
gccgtggtagttaatccttatggcgacaaggaattattaccatctgccctagagagacag
tttagagatggttgccaagaattgtcacttgagtcattgtcttgggatggtatcgttttc
caggtggactatgttgaccatgctgaagctgccgaaaagattatacaaaaagcgataagt
gaatacagagaagaaaattctggaccaactgttgtagtcactgaatgccctgactttaat
tccatcaaggatggtataaaagccctggatgatttcccatgtgtgaggattcccttcaac
ggcgatgacaatagttatcagcctgtctcctggcaacgtccggcagcaaaattagcaatg
ttccgttgtgctgcagcatttcagtggttggatcgaaggatttcccagtcaagatatgcc
catgtgcctttggggaattttggactagattggttaacattcacagtagatatcttcctg
tccagggcactccgcgaccagcagcaggtcctttgggtgtcagataatggtattccagac
cttggtggtctgaacaatgaagagacattctttgctgatgaggtgcaacagacaagtttg
gtatatcctggagcgtatagaaaaatttctgtggagttaaagatccatcacttggctgtt
aatgcccttctgaaaagcaacctggtgagcgagatggaaggaggtgactttttgggattt
gaacaggatgtgaatcctagaggaagtagttcgaacgttaacgccagttttgatgagacc
actggatgtgctcaagcattccgagtcctgaaacaattaattaatagttgcttgactgat
gtgtgtaaatcacgcaatatatatgctgattccattttgcaacgtttgtcttggtggctc
tgtagcccttgctcgaagcttcatgatccagctcttcatctcatgcttcacaaggtcatg
caaaaggtgtttgcgctgcttttgactgatttgcggagattaggtgcaacaataatattt
gcagacttctcaaagatcgttatcgacacagggaaatttgatctatctgctgctaaggct
tattgtgacagcttgctcacagctgtagggaatagcgatatctttgagtggatcttgctc
gagccggttcactactggcactcattactcttcatggaccagtataactacgctggtatc
caagctaccgacgatgaaatttcacctgacgaagtgactattgaaccaaagtggagtgtc
gctcgacttttccctgagtatattcagagggatttcgtcataattgttgccaagtttata
tttgacccatggaaattctcattagagaagaaaagaggcagttcagagagtttagaggca
cagatggtagaatatctaaaggaacagataccatccagcttctttaatatgcttgttgca
aaaatcaatgatatcgtgtcacacatgaaggagatagacgtttcagatgcatctcgggat
tctagtcaagctcccaaaagagattacacgttagagctcatacaaactatctgtgctgtt
atgggtcttgaccaaaatgtcgagcaagatgttcgggtaatgaaaaggaatctgttgaag
tacattaacgtaaaagaatttgccgctgaagccgaatttcttgatcctgggccttccttt
atcttacctaatgtggcttgcagcaactgtgatgcctacagagacctagatattggcaga
gacccagctctattaacagagaaagaatggtgctgcatagattcacaatgtgggaagata
tatgacagagagcagatggaaaatagtcttctccagatggtgagacagagagaaagaatg
taccacatgcaggatctagtttgcactaggtgcaatcaggtgaaagcggctcatttgaca
gagcagtgtgagtgttctggatcctttagatgcaaggagggcgggtctgagttcctcaag
aggatggagattttcttggatatagcaaagcgccagaagtttaaactgttagaagaatgc
acatcttggatcttagatcccaccggaagctggcaaaccaataccggaagacatcattca
tag

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