Brassica rapa (field mustard): 103871701
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Entry
103871701 CDS
T03449
Name
(RefSeq) protein CHROMATIN REMODELING 20 isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
brp03000
]
103871701
03036 Chromosome and associated proteins [BR:
brp03036
]
103871701
Transcription factors [BR:
brp03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
103871701
Chromosome and associated proteins [BR:
brp03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
103871701
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
ADD_ATRX
Motif
Other DBs
NCBI-GeneID:
103871701
NCBI-ProteinID:
XP_018515509
LinkDB
All DBs
Position
A06:3353974..3363756
Genome browser
AA seq
1444 aa
AA seq
DB search
MDGREDTVEGKEEDRMEVEIEKVEAREEEQNDEVMMEENNNQDEQKDDEEMQDTDLRSES
SVSNSDEEEGLRSGNDDELDLEKPLSEEEVDELISDLLGVESKAAEAQEALEKESLSKVE
SEVREELAQTLDGDELDKAVEAEMITFKDEWEATLDELEIESANLLEQLDGAGIELPKLY
EMIESQAPNGCYTEAWKKRAHWVGTQVTKETGESLANAESFLLTHRPVRKRHGKLLEEGA
SGFLEKKFADDAVKECLTGTSELDWPSLNKVFSEKRDEAISFGSKHWASVYLASTPQQAA
AMGLEFPGVNEVEEIEEIDESLADPFFADAIENERELALTEEQKKNYIRVKEEDDINIDR
ELQLRLKRKRRMKRSKQVLRHTAEDRDDDSAYLYGNSIAPDPAKDQVKCPENSTEFQNNE
VNKEANGNLSNSDADKMVPVADLNVDTMRDDSQNPASNFRCTACNNVTVEVHSHPLLEVI
VCMDCKRLIEDRVAKQVDASLERHCEWCGHIADLINCRSCEKLFCASCIKRNIGEEYLSE
AQSSGWDCCCCAPIPLRRLTLELEKAMGDKKSMESSSDSSSDSSSDSSSDNNSVDTDADV
NVAVSSKKKSKKKIRRIIDDAELGKDTRSKIAIEKKRQERLRSLQFSARYKTISSMGDVK
IPEGAEAEVLGDAHSGYIVNVAREIGEEAVRVPRSISAKLKPHQVTGIRFMWENIIQSIN
SVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLKSALIVTPVNVLHNWRSEFT
KWMPSEVKPLRIFMLEDVSRERRLDLLRKWRNKGGVFLMGYAAFRNLSLGRGVKDINAAK
EFCSALRDGPDILVCDEAHIIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVD
FVREGFLGSSPEFRNRFQNPIENGQHMNSTAEDVKIMNQRSHILYEELKGFVQRMDMNVV
KKDLPPKTVFVISVKLSPLQRKLYKRFLKLYGFNDGRADERMRKNFFAAYQVLAQILNHP
GIPQLRSEDKKQGRRGSIVDIPDDCSSDENLDCNMVAGEKQRNMSDLQDKVDGYLQKDWW
VDLLQKNNYKVSEYSGKMILLLDILSMCAHVGDKALVFSQSIPTLDLIELYLSRVARHGK
HGKCWKKGKDWYRIDGKTESSERQKLVDKFNEPENKRVKCTLISTRAGSLGINLYAANRV
IIVDGSWNPTYDLQAIFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVNKEGLAARVVDR
QQVHRTISKEEMLHLFEFDDDDEKSDAVTEISKRKEAATSSRGCDSDKLMENLLQRHSPD
WISSFHEHETLLQENEDERLTKEEKDMAWEVYRKALQWEEVQRTPVNEAPVLQKPSPSPQ
IQPLRHPRGFNRSRFVNRSCTRIAHELTLISQRRKVGSSTICGECGCVITWEDVLPAPKL
SEVN
NT seq
4335 nt
NT seq
+upstream
nt +downstream
nt
atggatggaagagaggatacagtggagggaaaagaggaagacagaatggaggtggagatt
gagaaggtggaagcaagggaggaggagcagaatgatgaagttatgatggaagaaaacaac
aatcaagatgagcagaaagatgatgaggagatgcaagatactgatttgagatctgagagt
tctgtttctaattcagatgaagaggaagggttgcgttcggggaatgatgatgagttggac
cttgagaaacctctaagcgaggaggaagtagacgagttgatttcagatcttttgggagta
gagagtaaggctgcagaagcgcaggaagcacttgaaaaggagtctctttctaaagtagaa
agtgaagttagggaggaattagcacaaacactcgatggtgatgagctggataaagctgtg
gaagctgaaatgattacatttaaagacgaatgggaggcaactcttgatgagcttgaaatt
gaaagtgcaaacttgttggagcaacttgatggtgctggaattgaacttccaaaattgtac
gaaatgatcgaaagtcaagcccctaatggttgttacactgaagcttggaaaaaaagagcc
cactgggttggtactcaggtgacaaaagaaactggggaatcattggcaaacgcagagagt
tttcttctcacccaccgacctgtccgaaaacgacatggaaaacttttggaggagggagct
agtgggtttctggagaaaaagtttgcggacgatgcagttaaagagtgtctaactggaaca
tctgagcttgactggccgtctctcaacaaggttttttcggaaaaaagagatgaggctatt
tccttcggtagtaagcactgggcttctgtttacttggcaagcactccacaacaagctgca
gccatgggattagaatttccaggagtcaatgaggtggaggaaattgaagagatagatgaa
agtttggcagacccttttttcgccgatgcaatagaaaacgaaagagaacttgccctcact
gaagaacaaaagaaaaactatataagggtcaaagaagaggatgatataaatatcgatcgt
gaacttcaacttcgtttgaaacggaagaggcgcatgaaaagatctaaacaggttctcagg
cacacggcagaggatagggatgatgattccgcgtatttgtatgggaattcgattgcccca
gaccctgctaaagatcaagtaaaatgtccggagaatagcactgagtttcaaaataatgaa
gttaacaaagaggcaaacgggaatttgtctaattcagatgcagataagatggtccccgtc
gcagatcttaatgtagataccatgagagatgattcacagaatccagcaagcaattttagg
tgtactgcctgtaataacgtaactgtggaagtgcacagtcatccccttttagaagtaata
gtttgcatggattgcaaacgtttaattgaagatagagtcgctaagcaggttgatgcctct
ttggaacgtcactgtgaatggtgtggacacattgctgacttaataaattgtaggtcatgc
gaaaaacttttctgtgcatcatgtataaagaggaatattggtgaagaatacttgtctgaa
gctcaatcctctggttgggattgttgctgttgcgctccaattcccttgcgaagactgaca
ctggaactggagaaagccatgggagataagaagtcaatggagtctagctctgattccagc
tcggattctagctctgattccagctccgataataattctgttgatacagatgctgatgtc
aatgtagcagtaagctcaaagaagaaatcgaaaaagaaaatccggcggataattgatgat
gctgaactagggaaagatacgagaagtaaaatagcaattgagaagaaacgacaggagcgc
cttaggtccttgcagttttctgccagatacaaaacaattagctctatgggagacgtgaaa
attccagaaggtgcggaagctgaggttcttggtgatgcacacagtggttacatagtgaat
gtggctagggagattggtgaagaagctgtgagagttcctcgtagcatatctgccaaacta
aaaccccatcaggttacagggattagatttatgtgggaaaatattattcagtctatcaac
agtgtgaagtctggtgataaaggtcttgggtgcattctagcacatacaatgggcctgggg
aaaacttttcaggttatagcgttcctctacactgcaatgagatgtgttgatttgggcctg
aaatctgctcttattgtgactcctgtaaatgtgttgcacaattggcgaagtgaatttacg
aagtggatgccttcagaagtgaaaccacttcgcatcttcatgcttgaagacgtttcgagg
gagaggagattggacttgctaaggaagtggcgaaataagggcggagtcttcttgatggga
tatgccgcttttagaaacctgtctcttggtagaggggtgaaggatataaatgcggccaaa
gaattctgcagtgccttgagggatggacctgatatacttgtttgtgacgaggctcacatt
atcaagaacaccagggctgacacaacccaagcattaaagcaagttaaatgccagagaaga
attgccttaacagggtcaccccttcaaaacaatctcatggaatattattgcatggttgac
tttgtaagagaaggattcttgggaagtagccctgagtttagaaatcgcttccaaaatcca
atagaaaacggacagcatatgaattcaactgcagaggacgtgaaaattatgaaccagaga
tcacacatcctgtatgaggaattgaaaggatttgtgcaaagaatggatatgaatgtcgtg
aaaaaggatctgccacctaaaacagtcttcgtaatatctgtcaaactatcgcccttgcag
cggaagttgtataagagatttctaaagttatatgggttcaatgatggaagagcagatgaa
aggatgagaaaaaacttttttgctgcttaccaggtcttggctcagattttgaatcatcca
gggattccgcaattaagaagtgaagataagaaacaaggtcgccgcggtagcattgttgat
attccagatgactgttcaagtgatgaaaatttagactgcaacatggttgcgggagagaaa
cagaggaatatgagtgatttgcaagataaagttgatggctacctccagaaggattggtgg
gtcgacctacttcaaaaaaataattataaggtctcggaatatagtggcaaaatgattttg
ctcttggatattttatccatgtgcgctcatgtgggcgacaaggcgctcgtgtttagccag
agtatcccgacactggatctcatagaactttatctttcaagagtagctcgtcatggtaaa
catggcaagtgttggaaaaagggaaaagactggtatagaatcgatggaaaaaccgaaagc
tcagaacgacagaagttggttgataagttcaatgagcctgaaaacaaaagggtgaaatgc
accctaatctcaactagagcggggtctcttgggattaatctttatgctgctaaccgcgtg
atcatcgttgatggttcatggaatccaacttatgatcttcaagctatctttcgagcttgg
aggtatggccaaaagaagccggtatttgcgtacaggttgatggcacgtgggactattgaa
gaaaaaatatataaacggcaggtgaacaaggaggggctcgctgcgagagtggtggataga
caacaggtgcacaggactatctccaaagaagagatgttacatctttttgaatttgacgat
gacgatgaaaaatctgacgccgtcactgagataagcaagcgaaaggaagcggccacttca
tctcgcggttgcgactctgacaaattgatggagaacttactgcagagacatagccccgac
tggatctctagtttccatgagcacgagacattgctacaagaaaatgaagatgaaagactg
acaaaggaagaaaaagacatggcctgggaagtttataggaaagcgcttcagtgggaagaa
gttcaacggacaccagtcaatgaagcacctgtgctacaaaaaccttcgccatcaccacaa
atacagcccttacgccacccgagggggttcaacagaagtcgttttgtgaaccgaagctgc
actagaatcgcgcatgagcttacactcataagccaaagaagaaaagtgggtagcagcaca
atctgtggggagtgtgggtgcgtcataacgtgggaagatgttttacccgcacccaaactt
tcagaggtaaactaa
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