Brassica rapa (field mustard): 103871766
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Entry
103871766 CDS
T03449
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
103871766
Enzymes [BR:
brp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
103871766
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
PhoLip_ATPase_N
CarboxypepD_reg
CBM_4_9
Motif
Other DBs
NCBI-GeneID:
103871766
NCBI-ProteinID:
XP_033128354
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Position
A06:complement(3815465..3820161)
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AA seq
720 aa
AA seq
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MGITSHTIIFVDSISRKLQDISADFIMFKLSSHVYQLVTTIGYRRHLLRQGGWIVALIMF
LSLFEIAISQNQSSDPESTQVLQLHYQDGHVVVDNGIFQLTLSNPEGFVTGVRYNGIENV
LAYTGNEHDRGYWDLVWNFPGKKIKKSKGTLDRIEATKMEVITQSDEEIELSFSRTWNAS
STTALPVNIDKRFVMLRNSSGFYSYAIFERLKGWPAVELDNIRLVFKLNQDKFHYMAISD
ERQRYMPIPEDRIPPRGKPLAYPEAVQLLDPMEPEFKGEVDDKYEYSMESKDIKVHGWIS
TNNSVGFWQITPSNEFRSAGPVKQFLGSHVGPTNLAVFHSTHYVGAELIMSFEEGEAWKK
VFGPVFIYLNSFSKGVDPLLLWTQAKNQTKIEEEKWPYNFTASSDFPASDQRGSVTGRLL
VRDRYIRSEDIPANGSYVGLAAPGDVGSWQREYKGYQFWSKADEKGYFSINNVRTGHYNL
YAFVPGFIGDYHNQTVFNISPGTNISLGDLVYEPPRDGVTLWEIGVPDRTAAEFYIPDPN
PTFTNKLYLNRSDKYRQYGLWERYAELYPHEDMVYNVDVDSYSKKWFYMQVTRKQADGGY
NGTTWQIKFQLDEKMKNFTGNFKLRIALATSNVAELQVRVNDVSKDPPLFTTGEIGKDNT
IARHGIHGLYWLYSVNVPASSLRNGNNTIYLTQPLARSPFQGLMYDYIRLECPDSISHLT
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgggcatcacgtcacatacgattatttttgtggacagcatttcgagaaagctccaagac
atatccgctgattttatcatgtttaagttgtcttcacatgtttaccagctcgtgacgacc
ataggttaccggagacacttactgagacagggaggatggatcgttgctttgatcatgttc
ttgtctttgtttgaaattgcgatctcccaaaaccaaagttctgatccagaatcaacacaa
gtcttgcagttacattaccaagatggacatgtggtggtggataatggaatttttcaatta
actttgtcaaaccctgagggatttgtcaccggagttaggtacaatggtatcgaaaatgta
cttgcctacaccggcaatgaacatgatagaggttactgggacttagtgtggaactttcca
gggaaaaaaattaagaagtccaaaggcacattagaccgtattgaagcaacaaagatggaa
gtgataacgcagagcgatgaagagatagagctatcgttttcaaggacatggaatgcttct
tcaactacggctcttccagtaaacatagacaagaggtttgtaatgctgcgaaactcgtcc
gggttctacagttatgccatcttcgagaggttaaaagggtggcctgctgttgaactcgac
aatatccgattagtatttaagctaaaccaggacaagtttcattacatggcgatttcagat
gagagacaaaggtacatgcctataccagaagatcggattcctcctcgaggtaagcctctt
gcttacccggaggccgttcagcttctcgaccctatggagcctgagtttaaaggagaggtg
gatgacaagtatgaatactcaatggagagtaaagacataaaagttcatggatggataagc
acaaataactcagttggtttctggcaaatcactccgagcaacgagttcagatctgctggt
cctgtcaagcagttcctaggctcccatgtcggtccaaccaacctcgcggtattccacagc
actcactatgttggagcagaactaatcatgagttttgaagaaggtgaagcatggaagaaa
gtgtttggacctgtctttatttatttaaactctttttctaaaggagttgatcctctcttg
ctatggactcaagccaagaaccagacaaagattgaagaagagaaatggccttataacttc
acagcttcaagtgacttccctgcatctgaccaaagagggtctgttaccggcagattactt
gttcgagaccgatacataaggagtgaggatatacctgcgaatggttcctacgtgggttta
gctgcaccaggagatgttggctcatggcaaagagaatacaaaggttatcagttctggtca
aaagcagacgagaaaggatacttttctatcaacaatgttagaactggtcattacaatctc
tatgcatttgttcctggattcatcggtgattaccacaaccagaccgttttcaacatctct
ccaggtacgaatattagcttaggtgacttggtgtatgagcctccaagagacggtgtaact
ctatgggagatcggtgtaccagaccgaaccgctgcagagttctacattcctgaccctaac
ccgacgtttactaacaaactatacctaaaccgttctgataaatacagacaatatggatta
tgggaacggtatgccgaactgtacccccatgaagatatggtttacaatgttgatgttgat
agttactccaaaaagtggttctacatgcaagttacaaggaagcaagctgatggaggatac
aacggtacaacatggcagatcaagtttcaactcgacgaaaaaatgaaaaacttcactgga
aatttcaaactgaggatcgctctagccacttcaaatgtagcagaactgcaggttcgtgtg
aacgatgtttctaaggatccaccattgtttacaacgggggagataggaaaggataatacg
attgcaagacatggtatacatggactctattggctatacagtgtgaatgttccagcttct
tctcttcgcaatggaaacaacaccatatacctaacccaaccacttgccagaagccctttt
caaggactcatgtatgactatattcgtctcgagtgtcctgattccatcagtcatctcact
tag
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