Brassica rapa (field mustard): 103871838
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Entry
103871838 CDS
T03449
Name
(RefSeq) pre-mRNA-processing factor 17 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103871838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
brp03041
]
103871838
Spliceosome [BR:
brp03041
]
Complex C
Other components
Step II factors
103871838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
ANAPC4_WD40
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_DCAF4
WD_LRWD1
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
Beta-prop_WDR75_2nd
Beta-prop_Vps41
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
103871838
NCBI-ProteinID:
XP_009148395
LinkDB
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Position
A06:complement(4134915..4137325)
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AA seq
566 aa
AA seq
DB search
MDLIQSYDGGDASSSPEPSPPRMLKAKSSAPEVDDTALALTVSNASQSKSNPINPTQHAV
AFNPTYDQLWAPIYGPAHPYAKDGIAQGMRNHKLGFVEDASIGSFVFDEQYSTFQKYGYA
ADPSGMNYVGDAEALKQNDGVSVYNIKQSDQKRRKLEESKGEEEVEIAAEAENPATEAWL
LKNRKSPWSRKKEVVQGELTEEQKKYAEDHAKKKEEKSQQGEAKGEAFTDKSTFHGKEDK
DYQGRSWIEAPKDAKANNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLLLSAGMDCKV
KIWDVYNSGKCMRTYMGHGKAVRDICFSNDGTKFLTAGYDKNIKYWDTETGQVISTFSTG
KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDINSGEITQEYDQHLGAVNTITFVDNNRRF
VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPAISVHPNGKWLAAQSLDNQILIYGTRER
FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGRCWFWDWKSCRVFKTLRCHNGVC
IGAEWHPLEQSKVATCGWDGLIKYWD
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atggatctgattcaatcctacgacggaggagacgcctcttcctcgccggaaccctcaccg
cctcgcatgctgaaggcgaagtcatcggccccggaggtagacgacacggcgctcgctctc
acggtatccaacgcgagccaatcgaaatcgaacccgatcaacccgacgcagcacgccgtc
gcgttcaaccccacctacgatcagctctgggctccgatctacggcccggcccatccctac
gcgaaggacgggatcgctcaggggatgcggaaccacaagctagggttcgtggaggacgcc
tcgatcgggtccttcgtcttcgacgagcagtacagcactttccagaagtacggctacgcg
gcggatccctccgggatgaactacgtcggcgacgcggaggcgctgaagcagaacgacggc
gtttcggtttataatatcaagcagagcgaccagaagaggaggaagcttgaggagagcaaa
ggcgaggaggaggttgagatcgcggcggaggctgagaatccggcgacggaggcgtggctg
ttgaagaacaggaagagtccttggtcgaggaagaaggaggttgttcagggagagttgact
gaggagcagaagaagtatgcggaggatcacgccaagaagaaggaagagaagagccaacag
ggagaagctaaaggagaggcttttacggataagagcactttccatggcaaggaggataaa
gactatcaagggaggtcgtggatcgaagctcctaaagacgcaaaggctaacaacgaccat
tgctatatcccaaagcgtttggttcatacgtggagtggtcacacgaaaggtgtttccgct
attcggttcttcccaaagcatggacatttgcttctctccgcaggtatggattgcaaggtc
aagatttgggatgtgtataactctggcaagtgtatgaggacttacatgggtcacggtaaa
gctgtgagggatatttgtttctctaatgatgggactaagttcttgactgctgggtatgat
aagaacattaagtattgggatacagagactggtcaagttatatcgactttctccactggg
aagattccatatgtggtgaagctgaatcctgatgatgacaagcagaatattttgttggcg
gggatgagtgataagaagatagtgcagtgggatattaactccggggagattacgcaagag
tatgatcagcacttgggtgcggttaacacaatcacgtttgtggataataacagaaggttt
gtcacttcaagtgatgataagtctcttcgtgtgtgggagtttgggataccggtggttatc
aagtatatcagcgagcctcatatgcactccatgcctgccatttctgttcacccgaatggg
aagtggcttgcggcgcagagcttggacaaccagattctgatctacggtaccagggaaagg
tttcagctgaataagaagaagaggtttgcagggcacattgtggccggttatgcatgccaa
gttaatttctcgccagatggaaggtttgtaatgtcgggagatggagagggtaggtgctgg
ttttgggactggaagagctgcagagtgttcaagactcttagatgtcacaacggagtatgc
attggagccgagtggcatcctctggaacagagcaaagtcgcaacttgtggatgggacggc
ttgattaagtactgggactaa
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