Brassica rapa (field mustard): 103872392
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Entry
103872392 CDS
T03449
Name
(RefSeq) probable CCR4-associated factor 1 homolog 2
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103872392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103872392
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103872392
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103872392
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
103872392
NCBI-ProteinID:
XP_009149028
UniProt:
A0A397YWD1
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Position
A06:6456497..6457889
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AA seq
276 aa
AA seq
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MTMVTKQDDAIEIEIRNVWNENLHHEMSLISQAINYFPYVAMDTEFPGTVCKKVTTDTNP
RRDDSTCYESLKTNVNMLNMIQLGLTLSDDQGNLPTFGTNKRQCVWQFNFREFNLRTDMY
APDSIELLRRSGIDFDRNSRVGIESKRFADLLMGSGVVLNEEIQWVTFHCGYDFGYLLRL
LTGRNLPEKQSEFLYLVKMFFPRVFDIKHMIGFCYDLFGGLSSVAERLEVERVGISHQAG
SDSLLTARVFRRMKETRFAGRSLDMYCGVLYGLGKC
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgacaatggttacgaaacaagacgacgcgatcgaaatcgaaatccgcaacgtctggaac
gagaatctccaccacgagatgtctctgatctcgcaagccattaactatttcccttacgtg
gccatggacacagagttccccggaaccgtgtgcaagaaagtaaccacggacaccaaccca
aggcgcgacgactccacctgctacgagtcgttaaagacgaacgtgaacatgctcaacatg
atccagctcggcctcaccttatccgacgaccaaggaaacctcccaaccttcggaaccaac
aagaggcaatgcgtctggcaattcaacttcagagaattcaacctcaggaccgacatgtac
gcccctgactccatcgagcttctccgccgctcggggatcgacttcgatagaaacagcaga
gtcggcatcgagtccaaacggttcgcggatcttctcatgggatcgggagtagtgctcaac
gaggagatacagtgggtgacgttccactgcgggtacgacttcgggtacttgctgaggctc
ctcaccgggaggaatctcccggagaagcaatcggagtttttgtatctggtgaagatgttt
ttcccgagggttttcgatatcaaacacatgattggtttctgctacgatctcttcggcggt
ctgagctcggtggcggagcgactcgaggtggagagagtcgggatctcgcaccaggcgggg
tcggatagtttgctgacggcgcgtgtgtttaggaggatgaaggagacgcgcttcgctggt
cgttccttggatatgtattgtggtgttttgtatggattaggaaaatgttaa
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