Brassica rapa (field mustard): 103872502
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Entry
103872502 CDS
T03449
Name
(RefSeq) exopolygalacturonase isoform X1
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp00040
Pentose and glucuronate interconversions
brp01100
Metabolic pathways
Module
brp_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103872502
Enzymes [BR:
brp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
103872502
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
Motif
Other DBs
NCBI-GeneID:
103872502
NCBI-ProteinID:
XP_009149158
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Position
A06:6875275..6878336
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AA seq
400 aa
AA seq
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MACISYVFKNLCMFLLVVAVASRSGTWKIFDVRKYGAKGDGKTDNVNAFIKAWEDACAHS
GRNQIYIPRKKFYMSAVMFKGPCKGKTMFFNNGLLLAPLHPKHIKQDAWINFQYVDNLVV
TGHGTIDGQGSRSWSSTNFDMNRRLPANMAFDFVRKSRINGLISLNSKSEHLNFFCVDHF
NISHVNVTAPRNSPNTDGIKIGMSSNVKIRDSHIGSGDDCIAILSGNTNFDIHNITCGPG
HGISVGSLGKHKEEKNVEDITVRDTVFNGTSDGIRFKTWESSVAEITVSGFLYENIKMVD
VRHPINIDQKYCPYPPCPKLGDSHVQIRNVTFKNIWGTSRNKVAVNLQCSKSFPCKDIQL
IDINLIHNGSDGPATALCENVKGSARGKMFPPSCLNSACR
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atggcttgcattagttatgtgtttaagaatttgtgtatgtttctcttggtcgtcgcggtt
gcaagtcgatcgggcacgtggaaaatctttgatgtccgaaaatatggtgccaaaggcgac
ggcaaaactgataatgttaatgcattcataaaagcgtgggaagatgcgtgcgcacatagt
ggaagaaatcaaatttacataccaagaaaaaagttctatatgagtgctgtcatgttcaag
ggaccatgcaaaggtaaaactatgttcttcaacaatggattattactggctcctctacat
cccaagcatatcaaacaagacgcttggataaatttccaatacgtcgacaatctcgtagtc
accggccacggaactatcgacggccaaggaagtcgttcttggtcctccactaacttcgac
atgaatcgtagactaccagcgaacatggcattcgatttcgtgagaaaatcaagaatcaat
ggactaatatcactcaacagcaaatcggaacacttgaacttcttctgcgtagatcatttc
aacatctctcacgtcaacgtaacggctcctagaaacagccccaacactgacggaatcaag
attggtatgtccagcaacgttaagattcgggacagtcacattggttccggagacgattgt
atcgcaatcctctcgggaaacactaacttcgatatccataacatcacttgtggtcctgga
catgggatcagtgtcggaagcttgggaaagcacaaagaagaaaagaatgtggaggatatt
acggttagggacacggttttcaacgggacaagcgacggtataaggttcaagacatgggaa
tcttcggttgctgagatcacagtttcgggattcttgtacgagaatatcaagatggttgat
gtccgacatcctatcaacattgatcagaagtattgtccttacccaccgtgtccgaaatta
ggagactctcatgttcagatcagaaacgtgacgttcaagaatatttggggaacatcgagg
aacaaagtggctgtaaatttgcaatgtagtaaaagctttccttgcaaagatattcagctg
attgacatcaatttaatacataatggttctgacggtccagccaccgcgttgtgtgagaac
gttaaaggttctgctcgtggcaagatgtttcctccgagttgtttaaactcagcttgtcgt
tag
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