KEGG   Brassica rapa (field mustard): 103873011
Entry
103873011         CDS       T03449                                 
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03030  DNA replication
brp03410  Base excision repair
brp03420  Nucleotide excision repair
brp03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    103873011
   03410 Base excision repair
    103873011
   03420 Nucleotide excision repair
    103873011
   03430 Mismatch repair
    103873011
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:brp03032]
    103873011
   03036 Chromosome and associated proteins [BR:brp03036]
    103873011
   03400 DNA repair and recombination proteins [BR:brp03400]
    103873011
DNA replication proteins [BR:brp03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    103873011
  DNA Replication Termination Factors
   ELG1-RFC complex
    103873011
Chromosome and associated proteins [BR:brp03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    103873011
DNA repair and recombination proteins [BR:brp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     103873011
  Check point factors
   HRAD17(Rad24)-RFC complex
    103873011
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid Rad17 AAA_22 RuvB_N Mg_chelatase AAA_11 AAA_16 AAA_5 AAA_14 ResIII DEAD SLFN-g3_helicase AAA_24 nSTAND3 PhoH AAA_28 AAA_19 AAA_assoc_2 AAA_7 AAA_30 AAA_2 RNA_helicase Parvo_NS1 DUF815 AAA_25 NPHP3_N IstB_IS21 TIP49 AAA_18 bpMoxR NB-ARC
Other DBs
NCBI-GeneID: 103873011
NCBI-ProteinID: XP_009149687
UniProt: A0A3P5YGI0
LinkDB
Position
A06:9488722..9491893
AA seq 339 aa
MAPVLQSAQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSSNRQGGYPCPSFKIII
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
NRILHICNEEGLNLGGEALSTLSTISQGDLRRAITYLQSGARLFGSTITSTDLLNVSGVV
PLEVVKRFFTSCKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVVEAGDDITDNQKAKI
CKCLAETDKRLVDGADEYLQLLDVASNTITALSEMAQDY
NT seq 1020 nt   +upstreamnt  +downstreamnt
atggcgccagttcttcagagcgcacagccatgggttgagaaataccggccgaagcaggtg
aaggacgtggcgcatcaggaggaggtggttcgggtcctcaccaacactctcgagactgct
aactgtccgcacatgctcttttatggaccgccaggcacagggaaaaccactacggcactt
gccatcgcccaccagctatttggacctgaattgtacaagtcaagggtgttggagctgaat
gctagtgatgacagagggatcaatgttgttcggacaaagattaaggattttgctgctgta
gctgttgggtccagtaaccgtcaaggtggttatccttgcccatcatttaagatcatcatc
ctagatgaggctgattcgatgacagaagatgctcagaacgccttgaggcgcacaatggaa
acttactccaaagtcaccagattcttcttcatatgtaattatatcagcaggatcatagag
ccccttgcttcaagatgtgccaagttcaggtttaaaccactttctgaagaagttatgagt
aaccgtatattgcatatctgtaatgaagaaggtctcaaccttggtggtgaggctctttca
actttgagcaccatatcacaaggtgatctccggagggcaatcacgtatctgcagagtggt
gcccggttgtttggatcaacaataacgtccacggatttactcaatgtgtctggggtagtc
cctctggaggtagtcaagagattttttacttcatgcaaaagtggtgatttcgatattgca
aacaaggaagtggacaacattgttgcagagggatatcctgcatctcaaatcatcaatcag
ttatttgatatagtcgttgaggctggtgatgacataacagacaatcaaaaggctaagatc
tgcaaatgtctagctgaaacagataagcgacttgtagatggtgcggatgagtacctgcag
cttctggacgtggcaagcaatacaattactgcactctcagaaatggctcaagattactaa

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