Brassica rapa (field mustard): 103873514
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Entry
103873514 CDS
T03449
Name
(RefSeq) long chain base biosynthesis protein 2a-like isoform X1
KO
K00654
serine palmitoyltransferase [EC:
2.3.1.50
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp00600
Sphingolipid metabolism
brp01100
Metabolic pathways
brp04382
Cornified envelope formation
Module
brp_M00094
Ceramide biosynthesis
brp_M00099
Sphingosine biosynthesis
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09100 Metabolism
09103 Lipid metabolism
00600 Sphingolipid metabolism
103873514
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
103873514
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
brp01007
]
103873514
Enzymes [BR:
brp01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.50 serine C-palmitoyltransferase
103873514
Amino acid related enzymes [BR:
brp01007
]
Aminotransferase (transaminase)
Class II
103873514
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Aminotran_1_2
Beta_elim_lyase
DegT_DnrJ_EryC1
Aminotran_5
OKR_DC_1
SHMT
Cys_Met_Meta_PP
Motif
Other DBs
NCBI-GeneID:
103873514
NCBI-ProteinID:
XP_009150173
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Position
A06:17233818..17239725
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AA seq
485 aa
AA seq
DB search
MYFTTISTYLSCCLIIGFGHLRDFFRRILVLLFTNDNLQGYAPICFGHEDFYMRRGYHRV
QDCFARPIASAPDAWFDMVERDWNDGEKVIDRTTKRRRCLNLGSYNYLGFGSFDEYCTPR
VIESLKKFSASTCSSRVDAGTTSVHVELEECVAKYVGKHSAIVFGMGYATNSFIIPVLIG
KGGLIISDSLNHSSIINGARGSGANIRIFQHNKPSHLERILREIAERQTKTHKPWKKIIV
IVEGIYSMEGEICKLPEIVSICKKYKAYVYLDEAHSIGAIGNTGRGVCELLGVNTADVDI
MMGTFSKSFASCGGYIAGSKELIQYLKHHCPGHLYATSISTPSAQQIISAIRVILGEDGS
NRGAQKLARIRENSNYFRSELRNMGFKVLGDVDSPVMPIMLYHPAKIPAFSRECLRENVA
IAVVGFPATPLMLGRARICISASHSKQDLIKALEVISKVGDLTGIKYFPAAPKKQEAEKD
TIKLV
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgtactttaccactatctcaacatatttgagctgctgcttgatcatcggctttggccat
ctccgtgattttttccgtcggatcctcgttttgctattcaccaacgacaatctccaggga
tatgcgccaatctgctttggacacgaggatttctacatgagacgaggatatcatcgggtt
caggactgttttgcccgtccaatagcgagtgcaccagatgcatggtttgatatggtcgag
agagactggaacgatggggaaaaagtgatagatcgaacaacaaagagaagaaggtgcctc
aatttggggtcgtacaattatcttggatttggttcattcgatgaatattgcacgcctcgt
gttattgagtctttaaagaaattttcagcaagtacatgtagttctcgtgttgatgcagga
actactagtgtgcatgtagagcttgaggaatgtgtagctaaatatgtgggaaagcattct
gctattgtctttggcatgggatacgccacaaactcgtttatcattcctgttttgattgga
aagggaggattgataataagtgattctttgaaccatagttcaattattaatggtgctcga
ggttctggagccaatatccgcattttccaacacaacaaaccttctcacttggaaagaata
ctgagagaaatagcggaaagacaaaccaaaacacacaaaccctggaagaaaattattgtt
atcgttgaaggtatttacagcatggaaggggagatttgcaagcttcccgagattgtgtcg
atatgcaagaagtacaaggcatatgtttatttggatgaagctcatagcattggagccatt
gggaatacaggaagaggtgtttgcgaacttcttggagttaatacggctgacgtggacata
atgatgggaaccttcagtaaatcttttgcctcttgtggtggatatattgccggctctaag
gagctcatccaatatttgaagcaccattgcccgggtcatctttacgcaacatcaatttca
actccttccgcacaacaaatcatatcggccataagagttatccttggagaggacggttcc
aacagaggggcacaaaagctagcaagaatacgagagaacagcaattattttaggtctgag
ctacggaatatgggatttaaggtacttggagacgttgattctccagtcatgccaataatg
ctttaccatccagctaaaatcccagccttctctagggaatgcttgcgagaaaatgttgca
atcgccgtggtcggtttcccagctacacctctaatgctaggaagggctcgtatttgcata
tccgcatctcattcaaaacaagatcttattaaagccttagaggttataagcaaagtaggt
gaccttacaggaatcaaatattttcctgcagctccaaagaagcaagaagcggagaaagat
accatcaaactggtttag
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