KEGG   Brassica rapa (field mustard): 103873565
Entry
103873565         CDS       T03449                                 
Name
(RefSeq) histone deacetylase 7-like isoform X2
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03082  ATP-dependent chromatin remodeling
brp03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    103873565
   03083 Polycomb repressive complex
    103873565
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:brp03036]
    103873565
Enzymes [BR:brp01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     103873565
Chromosome and associated proteins [BR:brp03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     103873565
   HDAC complexes
    Sin3A-HDAC complex
     103873565
    BRAF-HDAC complex
     103873565
    REST complex
     103873565
    SHIP complex
     103873565
    MiDAC complex
     103873565
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     103873565
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    103873565
  Chromatin remodeling factors
   NuRD complex
    103873565
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 103873565
NCBI-ProteinID: XP_009150219
UniProt: M4DSM3
LinkDB
Position
A06:complement(16670521..16678826)
AA seq 423 aa
MKSIFVAFWRKRKTQRNRKRKKMASLASGPDGRKRRVSYYYEPYIGDGMESQQIRTTHKL
IRSYYLPRYMDIIRPRAAHHSDFTKFHSPEYISFLRSVTPESARLKTATDPSFKRFNLDA
WDSPVFSGLFPYCRLYAGGSISAAEKLNRHEADIAINWSGGMHRAKIDKACGFGYVNDVV
LGILELLKVFKRVLYIDIGYYHGEAVQEAFHKTDRVMTVSFHKSGVDQRRGDITDYGVGK
GEYYSLNAPLKNGLDDASFATLFVPIIQKAMEVYQPEAIVLLCGPDSLSGDALGKFNLSV
KGHGACLGYIRSFNVPLLLLGGQGHTLGNVARCWCYETGVAVGKELNDDCPMIADDDCFA
PSYKLHIEPNPMENLNTDGDIAKIKKTLLKQLSQVIHAPSVQFQDTPPISQVTEAEEEDM
ETR
NT seq 1272 nt   +upstreamnt  +downstreamnt
atgaaatcaatctttgtcgctttttggcggaaaagaaaaacgcagagaaatagaaagaga
aagaagatggcgagcttggcttcgggtcccgacggaaggaaacggcgcgtgagctactac
tacgagccatacatcggcgacggtatggaatcccaacagatccgtacgactcacaagctc
atccgcagctattacctccctcgctacatggatatcatccgccctcgcgctgcccaccat
tcagatttcactaaattccactcgccggagtacatatcattcctccgctcagtcacgccg
gagtcggctaggttgaaaaccgcgacggatccttccttcaagcgcttcaacttagacgcg
tgggactcccctgtcttcagtggcctcttcccatattgccgtctctacgccggtggttct
atttccgccgccgagaaactgaaccgacacgaagctgatatcgccatcaattggtccggc
gggatgcaccgtgccaagatagataaggcttgtggctttggctacgtcaacgacgttgtt
cttgggatcctcgagttgcttaaggtcttcaagcgagtactctacatagatattggctac
taccatggggaagcagtacaagaagcattccacaaaactgatagagttatgactgtttct
ttccacaagtctggggtcgaccaaagaagaggagacataacagactacggggtaggaaag
ggagaatactattctctaaatgcaccactgaagaatggtctggacgatgcaagtttcgcc
actttatttgtacctatcatccaaaaggctatggaggtttatcaaccagaagcaattgtt
cttctgtgcggccctgattcattatctggtgatgcgttgggtaaattcaacttgtctgtc
aagggtcatggtgcttgtctcgggtacataagatcatttaatgttcctctcctgctcttg
ggtggtcaaggtcacactcttggaaatgttgcacgttgctggtgctatgagacaggtgtt
gcggttggaaaagaactcaacgacgattgccctatgattgcggacgacgattgttttgcc
ccaagttataaacttcatatcgagccaaaccccatggagaatttaaacacagacggagat
attgcaaaaataaagaagacactactaaagcaactttcgcaagtgatacacgcacctagt
gtgcagtttcaagacactccaccaatcagtcaagttacagaagcggaggaagaggacatg
gagacgagataa

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