Brassica rapa (field mustard): 103874008
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Entry
103874008 CDS
T03449
Name
(RefSeq) probable starch synthase 4, chloroplastic/amyloplastic isoform X2
KO
K00703
starch synthase [EC:
2.4.1.21
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp00500
Starch and sucrose metabolism
brp01100
Metabolic pathways
brp01110
Biosynthesis of secondary metabolites
Module
brp_M00854
Glycogen biosynthesis, glucose-1P => glycogen/starch
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00500 Starch and sucrose metabolism
103874008
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
brp01003
]
103874008
Enzymes [BR:
brp01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.21 starch synthase (glycosyl-transferring)
103874008
Glycosyltransferases [BR:
brp01003
]
Polysaccharide
Storage polysaccharide
103874008
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Glyco_transf_5
Glyco_trans_4_4
RNase_P_pop3
TSC22
Motif
Other DBs
NCBI-GeneID:
103874008
NCBI-ProteinID:
XP_009150661
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All DBs
Position
A06:complement(20253233..20257869)
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AA seq
597 aa
AA seq
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MQSAANFPLKWNLSPLVSSSKVQLVNLKFRKAHALHCLRSEGHEEKFENSSQDKLGVSSV
IKEDKHKDIWSLFREAQQNILYLNKQRLAAVEELEKLKNERVELLEKINQLEEESHIVVK
KDKSSILWELLLRVDSMVLNGLIGTEEASSMRQLVREHQANISEFPLDVLQQGDAQVLAE
LRQLPNRGKRNGLHVIHICTEMDPLVSVGPLASYITGLSCALQGKGYLVEVILPKYSTLD
LDEVEGLREIEADAYSYFNGQLHANRIWNGVVSGVGVTLIQPVYYGSMFSRDKVYGYSDD
VDRFAYFSRASLDYIAKSGKQPDVLHIHNWQTAIVGPLFWDVFVNQGLEGTRILLTCQGF
DSKCLVPPEKLELCGLDPASVHRADRLQDNTNPQLVNLLKGGIVYSNKVVIMPSSPSEGR
TLHRNSIPGLEPTLAVHKEKLCFAPFGLDNSKWDPSIDVYLPENYSAEDIKGKSICKAEL
QRQLGLVEDVSTTIVGCIFSEISGVDLQSLKSLVRRTAKNDVQFVIMMMNEDQMIIKELE
KAQDEIEGGNLKVVTGNNEVVSHLIFAGSDIMLYLNFFQDPLLQVPLSVFSWCSSRL
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgcaatcagcggcgaattttccactgaaatggaatctgtcgccacttgtgtcatcctcg
aaagttcaattagtgaatcttaagtttcgaaaggctcacgcgcttcactgtttgagatca
gaagggcatgaagaaaagtttgagaattcttctcaggacaaacttggagtgtcttctgtt
ataaaagaagataaacataaggatatatggagcctctttagggaagctcaacaaaatatc
ctttacttaaacaagcaacgcctagctgcagttgaggagttagagaagctgaagaatgag
agagttgaattgctagagaagataaaccaattggaagaagaaagtcatattgtagtcaag
aaagataagtcatctatattgtgggagttacttctccgcgttgattcaatggtgctcaat
ggattgattggtaccgaagaagcttcatccatgagacaactggttagggagcatcaagcg
aacatctctgagtttcctcttgatgtcctgcaacagggagatgcccaagttctagctgaa
cttagacagttaccaaatagaggcaaaaggaatggtctccacgtaattcacatttgcacc
gagatggatccactagtttctgttggacctttggcttcatatattacaggactctcttgt
gcactccaaggcaagggctacttggttgaagtcatactgccaaaatactctacacttgat
ttggacgaagttgaagggcttagagaaatcgaagctgatgcatattcttatttcaatggc
cagcttcatgctaaccgaatatggaatggagttgtctctggagtaggagtgacacttatt
caaccagtgtattacggttcaatgtttagccgtgataaagtatatggctattcagacgat
gttgatagatttgcctacttttctcgtgcttcgttggattacatcgcaaaatctgggaag
cagcctgatgttttacacattcacaactggcaaactgcaatagttggacctctgttttgg
gatgtttttgttaatcagggacttgaaggtactagaatactcttgacatgccaaggattt
gactcgaagtgtcttgtgcctcctgagaagttggagctatgtgggcttgatccagctagt
gttcaccgtgctgatcgcttacaagataacacgaatccacaactggttaatttactgaag
ggtggtattgtctactcgaacaaagttgtaataatgccatcctcaccttctgagggtagg
acactccatcgtaattcaatccctggacttgaaccaactttagctgttcacaaggagaag
ttgtgttttgctccttttgggttggacaactcgaaatgggatccttcaatagatgtttat
ctccctgaaaactacagtgctgaagatataaagggaaaatcaatatgcaaagctgaattg
cagcgtcaactcggtttagtggaggatgtttcgaccaccattgtagggtgcatcttctca
gaaatatcaggtgttgatcttcagagcttgaagtcacttgttcggagaacagcaaagaac
gatgtccagttcgttataatgatgatgaatgaagatcagatgataatcaaggaacttgag
aaagctcaagatgaaattgagggaggaaatctaaaagttgtgacaggaaacaatgaagtt
gtttctcatttgatttttgcgggatcagacattatgctttatttaaacttcttccaagat
ccacttctccaagtccctctctcggtcttctcatggtgcagctcaaggctttga
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