Brassica rapa (field mustard): 103874030
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Entry
103874030 CDS
T03449
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 27 isoform X2
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
brp03041
]
103874030
03009 Ribosome biogenesis [BR:
brp03009
]
103874030
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103874030
Spliceosome [BR:
brp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
103874030
Ribosome biogenesis [BR:
brp03009
]
Eukaryotic type
90S particles
Helicases
103874030
Pre-60S particles
103874030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
SecA_DEAD
Motif
Other DBs
NCBI-GeneID:
103874030
NCBI-ProteinID:
XP_009150679
UniProt:
M4E6M4
LinkDB
All DBs
Position
A06:20372921..20375946
Genome browser
AA seq
591 aa
AA seq
DB search
MANLDMEQHSPEKEEMKTKTKKKRSRDKDKAKILKQLAKTEVKEPKAITDEEPKKKKKKK
LKQVAMEDEETKAINDEEPKKKKKKKAKQLEEEEEDKVEESGGNGIMTNETFESLGLSDN
THKSIKEMGFARMTQIQAKAIPPLMMGKDVLGAARTGSGKTLAFLIPAVELLYHVRFTPR
NGTGVIVICPTRELAIQSYLVAKELLKFHSQTVGKVIGGEPRKKEVEILVKGVNLLVATP
GRLLDHLENTDGFVFKNLKFLVMDEADRILEQNFEEDMKKIIKLLPKTRQTSLFSATQTS
KVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSAKRLLFLLTFLKTFHGKKKIM
VFFSTCKSTKFHTELFRYIKIDCLAIHGGMEQSKRTSTFFQFVKLETGVLLCTNVGARGL
DFPHVDWIVQYDPPDDPTEYIHRVGRTARGEGAKGKALLVLTPTELQFIQYLKAAKIPVE
EHEFEEEKLLNVQAFLEKTISENSALSVSAKEAYKTYISGYDSHSMKDVFNAHRLDLKEV
AASFCFSSPPKVLLKIHREGDGYRSKREPVNNKFNRGRGGRPGGKTKFERY
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatttggatatggagcagcattcacccgaaaaggaagagatgaagacgaagacg
aagaagaaaagatccagagacaaagacaaagcgaagatactaaagcagctagcgaagacg
gaggttaaagagccaaaagcaataacagatgaagaacccaagaagaaaaagaagaagaaa
ctaaagcaggttgcgatggaggatgaagagaccaaagcaattaacgatgaagaaccaaag
aagaagaagaagaagaaagcgaagcagctcgaagaagaagaagaagacaaagtggaggaa
agtggtggaaacggtataatgaccaacgaaacgtttgagtcattggggctatctgataac
actcataaatccatcaaagagatgggattcgcacgcatgactcagattcaagctaaagcc
attccgccgttgatgatggggaaagatgtactcggagctgccagaaccggttctggaaag
accttagcttttcttataccagctgtagagcttctttaccatgtccggtttactcctcgc
aatgggaccggtgttattgtgatttgtccaacaagagagcttgccattcagtcatattta
gtggcgaaggagcttcttaagttccattctcagaccgtgggaaaggttattggtggtgag
cccagaaagaaagaagttgaaattcttgtcaaaggtgttaatctgttggtagctacccct
ggaagacttctcgatcaccttgagaatactgatggatttgtgttcaagaacttgaagttt
cttgtgatggatgaggctgataggatactggaacagaactttgaagaagatatgaagaag
atcattaagcttctaccaaagacaaggcagacttcattattttccgccacacagacttcc
aaggttgaggatcttgctcgtgtgtcacttacgtcacctgtttatattgatgtggacgaa
ggaagaaaagaggttacaaatgaaggcttggagcaaggttactgcgttgtgccaagtgcg
aagcggttactcttcttactcaccttcttgaagacgtttcatgggaagaagaagatcatg
gtgtttttctccacttgcaaatcgacaaagtttcacacggaactctttcggtacatcaaa
atagactgcctcgccatccatggagggatggagcagagcaaaaggacttcaacgtttttc
cagttcgtaaagttggaaactggtgtcttattgtgtactaatgtaggtgcccgtggtctt
gactttccccatgtggattggattgtgcagtatgatcctccagatgatcctacggaatac
attcatagagtaggtagaacagctcgtggagagggtgcaaaagggaaggctctgcttgtt
ctaactccaacggagttgcaatttattcagtatctcaaggctgcgaagattcctgttgaa
gaacatgaattcgaggaagagaagttgctcaatgtgcaggcttttctggaaaagacgata
tctgaaaacagtgcattgagcgtgtcagcaaaagaagcatacaagacttacatatcagga
tatgattctcactctatgaaagatgtctttaatgctcaccgactcgatctcaaggaggtt
gcggcttcgttctgtttctcatcaccacccaaagtattgctgaagatacatcgagaagga
gacgggtacaggagcaagagagaaccggttaataataagtttaacagaggtcgtggtggt
agacctggcggtaaaactaagttcgaaaggtactaa
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