Brassica rapa (field mustard): 103874929
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Entry
103874929 CDS
T03449
Name
(RefSeq) polygalacturonase
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp00040
Pentose and glucuronate interconversions
brp01100
Metabolic pathways
Module
brp_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103874929
Enzymes [BR:
brp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
103874929
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Motif
Pfam:
Glyco_hydro_28
Beta_helix
BA3454
Motif
Other DBs
NCBI-GeneID:
103874929
NCBI-ProteinID:
XP_009151612
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All DBs
Position
A06:24103963..24105746
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AA seq
397 aa
AA seq
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MGVHFGISVLFVVCLLGLSANAKDFTITAPPGSDITSLLLKTFNEACQFPTRSSVLIPKG
EYKLRQIEMMGPCKAPIRITLQGTVKADGNVNGNDYWVAFRRINGFKLNGGGIFDGEGNA
AWRANNCHKMALTQCKKLPISIRFDFVTDAKIRGITSLDSKNFHINVLGARNMTLEEITI
IAPEESPNTDGIHVGRSVGVQIINSNIKTGDDCISIGDGTRDLLVERVTCGPGHGISIGS
LGLYVKEEDVTGIRVVNSTLINTDNGVRIKTWPSAACSTTASGIHFENIILKNVTNPILI
DQEYCPWNRCNKNKPSTIKLVDISFKHIRGTSGNKDAVKLLCSKGFPCKNVQIGDIDIKY
TGADGPATFQCSNVSPTLMGTQVPKACSSPVTKLPGQ
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtacattttggaatatccgtattatttgttgtttgtttgctaggtttatcagca
aatgctaaagatttcacaatcactgctcctccaggttctgatatcaccagcttactgttg
aaaacattcaatgaggcatgccagttcccgaccaggagtagcgtattgatccctaaaggt
gaatacaagcttaggcaaatagagatgatgggtccatgcaaagctcccataaggattact
cttcaaggcactgtgaaagctgacggaaacgttaacgggaatgactactgggttgctttc
cgcaggattaatgggtttaagttgaacggaggtggtatctttgacggtgaaggtaacgct
gcatggagggctaataattgccacaaaatggcattaactcagtgcaagaaactccctatc
agcatacggtttgatttcgtgactgacgctaagataagaggcataacctcgttggattca
aagaacttccacattaacgtgctcggagcaaggaacatgacattggaagaaatcacgatc
attgcccctgaagagagtcccaacaccgatggaatccacgtgggaaggagtgttggagtc
cagatcatcaactcaaacatcaaaacaggagatgactgcatctctattggagacgggacg
agagaccttcttgtcgaaagagttacatgcggtccgggacatggaatcagtattggaagc
ctcggattatacgtgaaggaggaagacgtcactggcatcagggtcgtaaactccaccctc
ataaacactgacaatggtgtaaggatcaagacatggccgtctgcagcttgctccaccacc
gcctcgggtatccattttgagaatattatcctcaagaacgttaccaaccctatcctcatc
gaccaagagtactgcccctggaaccgatgcaacaagaacaaaccatcaacaatcaagctg
gtggacataagcttcaagcatatcagaggaacatcagggaacaaagacgccgttaagctt
ttgtgcagcaagggatttccgtgcaagaacgtgcagattggtgacattgacattaagtac
accggagccgatggtccagcgacattccaatgctccaacgtatctcccacgttgatggga
actcaggtccctaaagcatgtagcagcccagtgactaagctaccaggccagtaa
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