Brassica rapa (field mustard): 103875380
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Entry
103875380 CDS
T03449
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
brp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103875380
09123 Folding, sorting and degradation
03018 RNA degradation
103875380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103875380
03041 Spliceosome [BR:
brp03041
]
103875380
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103875380
mRNA degradation factors
5'-3' decay
Lsm complex
103875380
Spliceosome [BR:
brp03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
103875380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
103875380
NCBI-ProteinID:
XP_009152143
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Position
A06:complement(26000728..26005980)
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AA seq
99 aa
AA seq
DB search
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDGALESVRDHDDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFNQPEAL
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggaagaaaggaaacggtgttggatttggccaagttcgttgacaagggtgttcaa
gttaagctcactggtggtagacaagtcactggaactcttaagggctacgatcagttgctc
aaccttgttcttgatggggctctagagtccgttcgagatcatgatgatcctttgaagacc
actgaccagacaagacgcctcggtttaattgtttgccgtggaactgcagtgatgctcgtc
tcaccaacagatggaactgaagaaatcgctaaccctttcaatcaaccagaagctctctaa
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