Brassica rapa (field mustard): 108871165
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Entry
108871165 CDS
T03449
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108871165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
brp03041
]
108871165
03009 Ribosome biogenesis [BR:
brp03009
]
108871165
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108871165
Spliceosome [BR:
brp03041
]
Complex A
U2 snRNP components
U2 related factors
108871165
Complex B
108871165
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
108871165
Ribosome biogenesis [BR:
brp03009
]
Eukaryotic type
90S particles
Helicases
108871165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
HA2_N
DEAD
Motif
Other DBs
NCBI-GeneID:
108871165
NCBI-ProteinID:
XP_018512848
LinkDB
All DBs
Position
A03:16422865..16424793
Genome browser
AA seq
355 aa
AA seq
DB search
MINDCNRFLEYNSIPKLEFNPNIFLLYDDHKKWVTESRVRLEDCSSSRTVLFLRYKVIIL
DEVHDRSLATDLLVGILNRTLISRPDLKLVVMSATLQAFNREYFRGAPLIKVPSGRLLHP
VEILYTRQPVMDYLESSISKVIEIHMCEPTGDVLVFLTGEEEIEHACSRIVRSLGDQVTV
VPLYSSLPPALQHKIFDPTPPPHAVRKIIVSTNVAETSLSMDGIVYVVDPGFSKQKNYSF
LTTDELWFVSRISQASAYQRAGRAGKICFRLYTENTFNDFMDGETPEILRSHLVITVLIL
KRLGVDDLTFFEYIDPPCTRMLLRALTDLFHRGAVDDQGNLTNIGHMMESLEEPL
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atgatcaatgactgtaacagatttctagaatataactcaatcccaaagctggagtttaat
cccaacatcttcttactgtatgacgaccataagaagtgggttacagagtccagagtccgt
ttggaggactgcagtagctcccgaacagtgctctttttaagatacaaagtgattatcctt
gacgaagttcatgatagaagtttagccacagatttacttgttggtattcttaaccgcacc
ttgattagccgacctgatcttaagcttgttgtgatgagtgctaccctacaggcttttaac
agagagtattttagaggtgcgcctctcatcaaagtcccttctggtaggctcctccatcca
gtggagatcttgtacactcgacaacctgtgatggactatctcgagtcttccataagcaaa
gttatcgagattcacatgtgtgaaccaacaggtgacgttcttgttttcttgaccggggaa
gaagagattgaacatgcttgcagcagaattgtccgtagtcttggagatcaagtcacagtt
gtgcccttgtattcctctcttccaccagctctgcaacacaagatcttcgatcctacacca
ccaccacatgcagtgagaaagatcatcgtctccaccaacgttgctgagacttctttgtcc
atggacgggattgtttacgtggttgatcctggtttctccaagcaaaagaactatagtttt
ctcactactgacgagctctggtttgtgtcccgaatatcacaagcaagcgcttaccagaga
gcaggacgtgccggtaaaatatgtttcaggctctacactgagaatactttcaatgacttc
atggatggggagactcctgagatacttagatcacaccttgttataacagttttgattttg
aaaaggctgggtgtggacgacttgacattttttgaatatatagatcctccttgcactcga
atgctccttcgggccttgaccgatttgtttcatcggggagctgtggatgaccaaggtaac
ctgacaaatataggccatatgatggagagtttggaagagccactttga
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