Brassica rapa (field mustard): 117125612
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Entry
117125612 CDS
T03449
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117125612
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
117125612
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117125612
mRNA degradation factors
5'-3' decay
Decapping complex
117125612
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_RIG_2nd
Beta-prop_EML_2
Beta-prop_TEP1_C
DUF1798
Motif
Other DBs
NCBI-GeneID:
117125612
NCBI-ProteinID:
XP_009146536
UniProt:
M4F0U7
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All DBs
Position
A05:complement(24304433..24310705)
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AA seq
1330 aa
AA seq
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MASSPGNTNPNNPPPFDLGTLFKPSSSPFPTPPASYPPPAGPFLQQPYAPPPPQQEAAPS
SSSSLLQQQRSLPFPSPPLNLLHSPSPSPSPRTSANHNPGTHILALLNNNGGVNNQDPPP
QQHQAPEIRSFPSGPLRVPSCKLPRGRRLSGEHAVYDVDVRLHGEIQPQLEVTPITKYGS
DPQLVVGRQIAVNKIYICYGLKGGNIRVLNINTALRALFRGHSQRVTDMAFFAHDVHLLA
SVSLDGKVFVWKISEGSEGDDDPQITGKIVLALQILGEEDTKHPRVCWHSHKQEILVVSI
GKHVLLVDTTKVGRGEVFSSESPIQCHLDKLVDGVKIVGKHDGEVTDLSMCQWMITRLVS
SSVDGTVKIWQDFKAQPVAVLRPHDGHPVNSATFVTSPERSDHVILITGGPLNREMKIWV
PTGEEGWLLPAESESWNCTQKLDLKSSTEPRAEMAFFNQVIALSEAGLLLLANAKRNAIY
AVHLDYGASPADTRMDYLSEFTVTMPILSFIGTNDPPEEAVVKVYCVQTQAIQQYTLDLS
LCLPPPIEENVGLEKSDSSVSREANLVEGISKPSGMKLTDLPSVDSVPKPSILVNRSKGA
NTSTYPAGSASVETTAPVLVSSNGEPKASGLLSETSAAGSTYATSPQLPLSPRLSSTLSG
HQTPVDVIEPMLPHHELGGQGPSSVYSVDRQPDPVKERNLEESSRSKDNDVTPDDDVSGM
RTAQAFFKHPTHLVTPSEFLMRVPSTEASITTDDKRDRDANIQDVNIDSRDTEVEVKEVG
ESSSTQNGEINYSDETEHRTSVNTEKTFYSQTTNLSTEMARDCYPGTELEESKAYEQSVQ
AGDNLDSRDVSGKLPESVSSIGLSQSAATNKGKKQKSKSSQGPGLSSTSSNVANLADTYN
EQTQSSSQPILALQETMNQMMVSQKEMQRQLSNAVNGPVTKEGKRLEVALGRMIERSSKS
NADALWARLQEEIVKNEKAMRDNSQQIVNAVTNFMSKELNALFEKTIKKEFATMIPALAR
ALSPAIEKTVSSSVTESFQRGLGDKAVNQLDKSVNLKLEATITKQIQTQFQTSGRQALQE
ALRSGLEASLIPSFERSCKTMFEQVDAAFQKGMAEHTNAAQQRFDAGHSQLAHTLKETIT
SASSVTQALSRELAESQRNRLALAAAGANSSGSNTLVSQRSSGPLGALLEKVEADPITEL
SRLISERKYEESFTSALQRSDVSIVSWLCSQVDLRGLLAMNPLPLSQGVLLSLLQQLACD
ISKDSSRKLAWMTDVVAAINPSDPMVAVHGRPIFEQVYQILHHHRNAPGSDVSATRLIMH
VINSMLMACK
NT seq
3993 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcttcacccggtaacactaaccccaacaatcctccgccgttcgatctcggtact
ctcttcaaaccttcgtcgagccctttccccacgccgccggcgtcttaccctccccccgcg
ggtccctttctccagcaaccctacgctcctcctcctccgcaacaagaagccgcgccttcc
tcttcgagtagcctcctccaacaacagagatcactccctttcccctcgccgcctctgaat
ctcctccattcgccgtcgccgtcgccgtcgccgcgcactagcgctaatcacaatcccggc
acacacatcctggctctcctcaacaacaacggcggcgtgaacaatcaagatccgccgccg
cagcagcatcaggctcccgagatccgctcgtttccttcgggtcctcttcgcgtgccgagc
tgtaagcttccaagagggaggcggttgagcggggagcacgctgtgtacgatgtcgacgtg
aggttacacggcgagattcagcctcagctcgaggtgactccgattactaaatacgggtcg
gatcctcagcttgttgtgggtcgtcaaatcgcagtgaacaagatctacatatgctatgga
ttgaaaggaggaaacattcgtgttctcaatattaacaccgcgttgagagctttattccga
ggccattctcagcgagtgacagacatggccttctttgctcatgatgttcatctcttggct
agtgttagcttagatggaaaagttttcgtgtggaaaatatctgaaggctctgagggagat
gatgaccctcagataactgggaagattgttcttgctcttcagatacttggtgaggaagac
accaaacatccacgtgtttgttggcactcccacaaacaggaaattttggtggtttcaatt
ggtaaacacgtcctcctagttgatactactaaagttggcagaggtgaagtattctcgtct
gagtctccgattcagtgccaccttgataaattggttgacggtgtgaagattgttggcaag
cacgatggagaggttacagatttatctatgtgccagtggatgatcacacgcctcgtttct
tcctctgttgatggcacggttaagatttggcaagatttcaaggcccaaccagttgcagtt
ctgagacctcatgatggccatccagtcaattcggcaacatttgtgacatcccctgagaga
tctgatcacgtcattctcatcactgggggtcctctaaatcgagagatgaagatttgggtc
ccgactggtgaagaaggatggctcctgccagctgaatctgagtcatggaattgtactcag
aaacttgatttgaaaagttcaactgagccacgagcggagatggcgtttttcaaccaagtt
atagccttgtctgaagcaggcctcctcttgcttgcaaatgcgaaaaggaacgccatatat
gctgtgcatttggactatggcgcatctccagctgatacaaggatggactacttgtctgag
tttacagtcactatgccgatattaagttttatcgggactaatgatcctccagaagaagcc
gttgttaaggtttattgtgttcagacgcaagcaatccagcagtatacattagacttatcc
ttgtgtttgcctcctcctatagaggagaatgtgggtttggagaagtcagattctagtgtt
tcgcgggaggctaatttggttgaaggcatatcaaaaccatctggaatgaagcttacagat
ttaccttcagttgattcagtgcctaaaccatctattttagtgaatagatcgaaaggtgct
aatacttcgacttatccggcgggttctgcatctgtggagacgacagcaccagtacttgtt
tcatccaacggtgagcctaaagcttctggcctgctatctgagaccagtgctgcagggtcg
acgtatgctacttcaccccagcttcctctaagtcccagactatcaagtacgctttctggc
catcagactcctgtggatgttattgagccaatgctaccacatcatgaactcggtggccaa
ggaccttcttctgtatattctgttgataggcaaccagatcctgttaaagaaagaaatttg
gaggaaagctcaagaagcaaggacaatgatgttacgcctgatgatgatgtgtctgggatg
cgaaccgcacaagctttcttcaagcatcccacgcatcttgtaactccttcggagtttttg
atgcgcgttccgtctactgaagcttccattaccactgatgacaaaagggatagagatgca
aatatccaggacgtcaatattgattcaagagacacagaagttgaggtaaaagaagtaggg
gaatcaagttcgacgcagaatggtgaaatcaattacagtgatgaaactgagcatcgcact
tcagtaaatacagaaaaaaccttttactcacagactacgaacctgagcactgagatggca
agagactgttatcctggtacagagttagaggaatctaaggcttatgaacagtctgtacaa
gccggggataatcttgactcgagagatgtgtctggaaagcttcctgagtcggtttcatca
attgggctttcacagtcagccgctacaaacaaagggaagaagcagaagtccaaaagctca
caaggtcccggattgtcatctacatcctcaaatgttgctaatttggctgatacctacaat
gagcaaactcagagttcaagccaacctatcttagctttgcaagaaacaatgaatcagatg
atggtttcacagaaggagatgcagagacaactgtccaatgctgtcaatggccctgttact
aaagaaggtaaaagactagaagtggctttagggagaatgattgagagatccagcaagtca
aatgctgatgctctttgggcccgcttacaagaggagatcgttaagaatgaaaaggcaatg
cgtgataattcacagcaaattgtgaatgcagtgacaaacttcatgagcaaagagttaaat
gcattgtttgagaaaacgataaagaaggagtttgctacaatgattccagccctagctcgt
gcgttgtcaccagctattgaaaaaactgtatcttcctcagtcacagagtccttccagaga
ggacttggtgacaaagcagtcaatcagcttgataaatctgttaatttaaagcttgaggca
accataactaagcaaattcaaacccaatttcagacatctggcaggcaagccctccaggaa
gctcttaggtcgggtctggaggcctcgctcataccttcctttgagaggtcatgcaagacc
atgtttgagcaagtagacgcagccttccagaaagggatggccgagcacacaaacgcagcc
caacaacggtttgacgctggacactcccaacttgctcatactttaaaggaaaccattact
tctgcgtcgtcagttactcaagcattgagccgtgaattagcggagagccaaaggaatcgc
ttggctctcgccgccgctggagcaaattctagtggatcaaacaccttggtttctcaacga
agtagtggacctttgggtgctcttcttgaaaaggttgaagcagacccaataacagaatta
tcaaggttgatatcggaacgcaaatatgaagaatcatttacttcagctttacagagaagc
gatgtctccatagtatcatggctttgctcacaggtggatctgcgtggactactggcgatg
aacccgcttcctctaagccaaggcgttcttctgtcactgctgcaacagctagcctgcgac
atcagcaaggactcatcccgtaagcttgcatggatgaccgatgtggttgcagcaattaac
ccatcagacccgatggtagctgtccatggtcgtccaatctttgagcaagtgtatcagatt
ctgcaccaccaccgcaacgcaccaggcagcgacgtctctgccacgagacttataatgcac
gtgataaactccatgcttatggcctgcaaatga
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