Brassica rapa (field mustard): 117125656
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Entry
117125656 CDS
T03449
Name
(RefSeq) protein transport protein SEC16A homolog isoform X1
KO
K20353
COPII coat assembly protein SEC16
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
brp04131
]
117125656
Membrane trafficking [BR:
brp04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
117125656
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Sec16
Sec16
Motif
Other DBs
NCBI-GeneID:
117125656
NCBI-ProteinID:
XP_009114279
UniProt:
M4DLV2
LinkDB
All DBs
Position
A09:15068744..15075175
Genome browser
AA seq
1367 aa
AA seq
DB search
MASNPHSLLLDDQSDDEDFFDKLVDDSYSPSQAQAQAQAASSSANELKFGSDSDDDAKAF
ANLSLGDGDVQLNESASPGNDVVANEGPSSSMRKEETSSVPMEEADANKLSGDLVVRSEV
EDKPLSEAVKDGSGSPGVKEVDWGSFCADSSVNDGGGFGSYSDFFTQLDGSSTGNLQGKA
EVDAGNLESNDTKNTSFGFDSSAGLGQQHQGEVSQDSTSEQYVDNSQAWENSYPGWKYDA
STGQWYQVDGHDASVTSQESYIHSASNWESSVASTDNSNVAYLSQSTSSAVAGTAESMST
WNQVSQVANGYPEHMVFDPQYPGWYYDTIAQEWRSLDSYNQASQTTGTSQAYDQQAQNVQ
SLGAMSHNYTESNIYNVNGKSQAFKAQDSGIQNQQGSWDQSYYANNQPQVTNTWQSENGG
NNEASVTSVSFSHFGGNQQVNSLYSTESVAEQFKPNENGAQSFIPQHMNMASVPQHGPMS
FSNDFYNRQKSVDDTQQSYQSNQLFSPSVGRSPDGRPPHALVSFGFGGKLILMKDTNASL
QNSSFGSQGAGGSSISVLNLAEVTSGNASFSSLGEDSSSYFRSLHQRCLPGPLVGGNVGN
KDLNKWLDESILHCESSDMDFSRGKLLKMLMSLLRISCQYYGKLRSPFGTDTTQKETDSA
EAAVAKLFAFAKKDGFQNGGYAPLSQCLQHLPPESQMQVTASEVQNLLASGRKMEALQCA
QEGHLWGPALVIAAQLGEQFYADTVKQMALRQLVPGSPLRTLCLLVAGQPAEVFSNGSTS
GISVPGSVSAPQHQTQFGSSSMLDNWEENLGIITANRTTDDELVITHLGDCMWKERSEII
AAHICYLIADKNFDPYSDSARLCLVGADHWKYPRTYASPEAIQRTELYEYSKTLGNSQYI
LLPFQPYKIIYAHMLAEVGKLSVAQKYCQAVSKCLKTGRSTEVETWKQFVSSLEERIRFH
QQGGYTVAPAKLVGKFLNFIDSTAHRVVGGVPPPAPHSTTGNLQANEYQHHQQQEAAKLP
YSQSANTMQSLMSHASMEPIRELDGNSRTMAVHSRSVSEPDFGRTPIQDQPVSSKDKATD
GVPQVKPTVNVTSSRFSSFGFGILKNTVRRVLPSRSSKEAKLGDENQFYYDEKLKRWVEK
GVEPPAEEAALPPPPTVGTYRSNSLGYENKSEVKNEMSPPSGSLTGIPPISQGSNPFSAR
ARPRGRYVDTYNPDRGNSQTMFQSALAKSAKPPIPAKANFFIPAAPASSSTSNDQVTTEM
AAAETSQEYSAEEATAPPPPPSDSSFQSPTPSPITMQRFPSLDNIKRSGSGTSLNGDFPS
SGSRRTASWSGSLNSSFTSPTGPSNLKPSPLNGSNSSLGEELQDVEL
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaaccctcactctcttctacttgatgaccaatcggacgacgaggatttcttc
gacaagcttgttgacgactcctactctcccagccaagctcaagctcaagctcaagctgcg
tcttcttctgccaacgagctgaaatttgggagtgactccgatgatgacgccaaagcgttt
gcgaatctctctctgggtgatggagatgtgcaattgaatgaatcagcaagcccggggaac
gatgttgttgcaaacgagggtcctagtagttcgatgcggaaggaagagacttcatcggtt
cctatggaagaagctgatgcgaataagttaagtggtgatttggtggtgagatcggaggtg
gaggataagccgttatctgaagcagttaaagatggatctgggagccctggggttaaggag
gttgattggggctctttttgtgcagattcatctgttaatgatggcggcgggtttggttct
tactctgacttcttcacccagttggatggatcttctacaggaaacttacagggaaaggcg
gaggtagatgcggggaacttagaatccaatgatacgaagaacacaagttttggttttgat
agttcagcaggtttggggcaacaacatcagggtgaagtgagtcaagattctacaagtgag
cagtacgttgataacagtcaagcttgggaaaatagctatcctggatggaaatatgatgct
agtactggccagtggtatcaagttgatggccatgatgcaagtgtgacttcacaggagagc
tatatacactcagcgagtaactgggaaagcagcgtcgcctctactgataactccaatgtt
gcttatctgagtcagagtacatcatctgcagtggctggcacagcggagagtatgtctact
tggaaccaggtttcacaggtggcaaatggatatccagaacacatggtctttgacccacag
tatccggggtggtactatgacacaattgctcaagaatggcgctctctggacagctacaac
caggcttctcaaacaactggaactagtcaagcttatgatcagcaagctcagaacgtccaa
tctcttggagctatgtctcacaactataccgagagtaacatttataatgttaatggtaaa
agccaggcattcaaagcgcaagactctggtatacagaaccaacagggaagttgggaccag
tcttactatgccaacaatcagccgcaggttacaaacacatggcaatcagaaaatggaggt
aataatgaggcgtctgtaacttctgtctcgttttcacacttcggaggaaaccagcaagta
aatagtttgtacagtacggaatctgtggctgaacagtttaagccaaatgagaatggagct
caaagcttcatccctcagcatatgaatatggctagtgtcccgcagcatggaccaatgagt
ttctcaaacgatttctataatagacagaaatctgtagatgatactcaacagtcatatcaa
agcaatcagcttttctccccaagtgtaggaagatcacctgatgggcgtccaccacatgca
cttgtgagttttggctttggtgggaagctcattcttatgaaggatactaacgcctctctc
cagaattcatcattcggaagtcagggggctgggggaagctctatatccgtcctaaacttg
gcggaagttacttctgggaatgcttctttttcaagtcttggggaagactcttcgagttat
tttcgttctctgcatcaacgatgtcttccaggtcccttggttggaggaaatgttggaaat
aaagacctaaataagtggcttgatgagagtattttacattgtgaatcttctgacatggac
ttttcaagagggaagcttttgaaaatgcttatgtctttgctcagaatatcttgtcagtat
tatgggaaactccggtctccttttgggactgatacaacgcaaaaggaaacagattctgct
gaagcagcagtcgcaaaactttttgcatttgccaagaaagatggttttcaaaatggtggc
tatgctccattaagccaatgcttgcagcatttacctcctgaatcacaaatgcaagtaact
gcatcagaggtgcagaatcttctggcttctggtaggaaaatggaggctctgcaatgtgca
caagaaggccatttatggggaccagcgcttgttatcgcggcacagcttggggagcagttc
tatgctgatactgtgaaacagatggcccttcgccagctggtgcctgggtcacctttgcga
acattgtgcttgctggttgcggggcaacccgctgaagtgttctccaatggcagcacaagc
ggtatcagtgttcctggttccgtaagtgcgcctcaacatcaaacccagtttggaagtagt
agcatgcttgataattgggaagagaatttgggtataataactgctaacagaaccacagat
gatgagcttgtgattactcatcttggagattgcatgtggaaagaaaggagcgagataatt
gcggcgcatatttgctatttaattgcggataagaactttgatccatactcagatagtgcc
aggctctgccttgtcggagcagatcattggaaatatcctagaacctatgcaagtccagag
gctatacagagaacagagttatacgagtactctaagacgctgggaaactctcagtatatc
ttgttgccgtttcaaccatataaaatcatatatgcccatatgctggctgaagttggtaaa
ctttcggtcgcacagaagtactgtcaagcagtatcgaagtgtctcaagactggccgatca
actgaagtggaaacatggaaacagtttgtttcatcactggaagagagaatccgtttccac
caacagggcgggtatactgtggccccagcaaaacttgtcggaaaatttctcaactttatt
gatagtacagcacatcgtgttgttgggggggtgccaccaccagcaccacattcaactaca
ggaaacctacaggcaaatgagtatcagcatcatcaacagcaggaggctgctaagttgcca
tatagtcaatctgctaatacaatgcaatcattgatgtcgcatgcctcaatggaaccaata
cgtgagttggatgggaactcaaggacgatggcagtacattctagaagtgtctcagagcca
gatttcggtaggacgccaatacaggatcagcctgtctcctcaaaagacaaagctacagat
ggggtgccacaggtgaaaccaaccgtgaatgtgacaagttcgcggtttagcagctttggt
tttggcatattgaagaacaccgtacggagggtcttaccatctcggtcatctaaagaggcg
aaactgggtgatgaaaatcaattttactatgacgaaaaattaaagagatgggtggagaaa
ggtgtagaacccccagctgaggaagctgcattgcctcctcctccaacagtaggcacatac
agaagcaactcactgggttatgaaaacaaatctgaggtgaagaacgagatgtctccacct
agtgggagcttgacgggaatcccaccaatctcacagggctcgaatccattctcagctcgt
gcacgtccgaggggcagatacgtggacacctataatccagaccgtggaaactctcagaca
atgtttcagtcagctcttgcaaaatctgctaaaccaccaatccctgctaaagcaaatttc
ttcatcccagcagcacctgcatcatcatcaacttcaaacgaccaggtaaccaccgagatg
gctgctgctgaaaccagtcaggagtactcagcagaagaagccaccgcccctccaccacca
ccaagcgactcttcattccagtccccgacaccatctccaattacaatgcagagatttcca
agtctagataacatcaaaagaagtggatcaggaacgagtcttaacggtgattttccttcg
tcaggttccagaagaacagcttcatggagtggaagtttgaacagctcgtttacatctcca
acgggtccatcaaacctcaaaccaagcccactcaacggtagcaacagcagccttggagag
gagcttcaagacgtggaactgtaa
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