Brassica rapa (field mustard): 117125980
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Entry
117125980 CDS
T03449
Name
(RefSeq) uncharacterized protein LOC117125980
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117125980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
brp03041
]
117125980
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117125980
Spliceosome [BR:
brp03041
]
Complex A
U2 snRNP components
U2 related factors
117125980
Complex B
117125980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
Motif
Other DBs
NCBI-GeneID:
117125980
NCBI-ProteinID:
XP_033128987
LinkDB
All DBs
Position
A06:complement(17845727..17850645)
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AA seq
1204 aa
AA seq
DB search
MNCVRLRELEVLSYFSQEINKRVILIKLDCDSLIVILYVVSELQVQYWTSNKVQSLKFRF
EQTLWGIVLVMAFKLDSLESYTVEEMTTTSNIVVQSQGTFADRKSIKKIASVKRHDSEAD
NDGIKKSKKRKKHKRASDGDKILNTESSKVSEGSRRHEKSLLLYYKRTGKSWKRGYMLNE
VKTDEDKGDETDEETSDTEEEIRVVKVCEWVDPLAKLWNRDPEYLDRGQNDDVKKEKKEK
SSKKVKLSVEDVKIDNPNAVSKFRINPLREKLQATIFDMVLGGATNITTHGLDINDIQLI
IQCESPRDIVCTHGRMIDILCTSSEKITNLQRATFLVMYEADRMFDMGFEPQIICIIQTI
RHDQHTVLFSATFPRQDETLARKVLNKPIEIQVGGRSVVNKDITQLVEVRPKSERFLRLL
EILGEWYEKRKILVFVQSQKKCDALLKDLFKKIYHCISLHGGNEQSDQESTISDFKSNVC
NILIATSVAARGIDVKELELVVNYDAPNHYEYYVHRIGRTGRAEQKGCAVTFISEDDAKY
APYLVKALELSLQPIPDDLKEIADSFIAKVRQGTEQAHETGYVDSGLKFTEEEEKVTKAA
KKAQAKEYGFEEYKSDSEDEIDVIRKACVVGVDTSAHQAALAHIATIAAAVKANAAAMNP
PVTTNQLLPNGGGLTSLPKVIAKDEPIEESSQFLVDSDDASDKESDTKEPLRTRKKASPA
AGSSDVEEGKTEKNVRQRTVKKDKDVEDGLVTTSSTYDEVSDAEKALAVKATDADNEGEE
IDLSKHESEDISHTYGWPPLVCCFGSAKNVFVPSGRPANRFLDCKFKTVEARVEAFHRKE
EELKKELEIVKNQHASDSAVLLLVTRELEKVSLKLAAANDAKNLPLSQEENISKMISIHA
EKETISNKEIDVLKSELEKARSFEAEVKERDEIIEKIDAAKEVFKMAKSHAYGFADQWCT
KAIELEEQLEETNMMKKYASVSLVSLIKQLEGSNTRLQVMECEVIALKDKAKLMATVGLK
QSQVLKKSEHLLEPAEELLSKVEKEDIKLKTKLEIFKDEKSKTLSELERSKEEEEKSEPD
MQSLASVFHQASSERVLKNRLLSLGGQNYKTREEDKKLVIKSTNEKYEKMLHEVEQTNKP
FESSRGIVEDLLKMEFKLKGENVGLSLKKKGNLINKLTSNPTKLWFKGLGNMLYLMSLGN
LFYI
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgaattgtgtgagattgagagagcttgaggttttgagttatttttctcaagagattaat
aagagagttattcttattaagcttgattgtgattcattgattgtgattctatatgtggta
tcagagctacaggttcaatactggacctctaataaagttcaatccctaaaattcagattt
gagcaaacgttatggggaattgtactggttatggcgttcaagttagattcactggagtcc
tacacggtcgaagagatgacgacaacgagtaatattgtggttcaatctcaaggaaccttt
gcagatcgcaagtctataaagaagatcgcaagtgttaaaaggcatgattctgaagctgac
aacgatggcataaagaaatcgaagaagagaaagaagcacaaaagggcttctgatggagat
aagatattaaatactgaaagctccaaagttagtgaaggaagtcgaagacatgagaaatct
ctgctgctgtattataaaaggacaggaaaatcttggaagaggggttacatgctgaatgaa
gttaaaaccgatgaggacaagggagacgaaactgacgaagaaacttctgatacagaggag
gagatcagagttgttaaagtctgtgagtgggttgatcctttggctaagttatggaaccgt
gaccctgagtatctagatagagggcagaacgatgacgttaagaaggaaaagaaggaaaag
agcagcaagaaggtgaagctaagcgtggaagatgtcaaaattgataaccctaatgctgta
tcgaaattcagaatcaatccgttgagggagaagcttcaagccacgatttttgatatggtt
cttggtggtgctacaaatattactactcatggtctagatatcaatgacatccagttaatt
atccagtgtgagtctccacgtgatattgtgtgcactcatggcaggatgattgatattctt
tgcacaagcagtgaaaaaatcaccaatctgcaaagggccacattcttggtaatgtatgaa
gctgatcgtatgtttgacatgggttttgagcctcaaattatttgtattattcaaactatt
cgacatgatcagcacactgtgctcttttctgccacttttccacgtcaagatgaaactttg
gcacgtaaagtcttgaacaagcccattgaaatacaggttggtggaaggagtgttgtgaat
aaggatataacacagttagttgaagtcagaccgaagagtgagaggttcttaagactgctg
gaaattctcggggaatggtatgagaaaagaaagattttggtttttgtgcagtcgcagaaa
aaatgtgatgccttgttgaaggatttgtttaaaaagatttatcattgtatatctcttcac
ggtggtaacgagcagtctgatcaggaatcaacaatatctgactttaagagcaatgtgtgc
aatatattgattgccacaagtgttgcagctaggggtatagatgtgaaagagcttgagtta
gttgtaaactatgatgctccgaaccactatgaatattatgtgcatcgcattggcaggaca
ggaagggcagagcagaaaggctgtgctgtgacatttatctctgaagatgatgcaaaatat
gcaccgtatttagtcaaggccctggaactttcgctgcagccaatccccgatgatctgaaa
gaaatcgctgacagtttcattgcaaaggttagacagggtactgaacaagctcatgaaact
ggctatgtagatagtggcttaaaattcaccgaagaggaggaaaaagttacgaaagcagca
aagaaagcacaagcgaaagagtatgggtttgaggaatataagtctgactcagaagatgag
attgatgttataagaaaggcatgtgttgttggtgttgatacctcagcgcaccaggctgct
cttgctcatatagccaccattgctgctgctgttaaagctaatgctgctgcaatgaatcct
cctgtgactacaaaccagttgctgccgaatggtggtgggcttacctctctaccaaaagtt
atagcaaaggatgaacctatagaagaaagctctcagtttttggtagatagtgatgatgct
tcagacaaagaaagtgacacaaaagagccactgagaactagaaagaaagcttcaccagca
gcaggttcttctgatgtggaggaaggaaaaacagagaagaatgtgagacagaggactgtt
aagaaagataaagacgtggaggatggtttagtcactactagtagtacatatgatgaggtt
agtgatgccgagaaagccttggctgttaaagccactgatgccgacaatgaaggagaagag
attgatctgagcaaacatgaaagcgaagatatcagtcacacgtacgggtggcctcctctc
gtgtgttgttttggatctgcaaagaatgtttttgttccatcaggaaggccagcaaacagg
tttttggattgcaaattcaaaaccgttgaggcaagggtagaggcctttcatagaaaagaa
gaagaacttaagaaagaactcgagattgtcaagaatcaacatgcttcagactcagctgtt
ctactgttggtaacccgagagctagagaaagttagcttaaaactggccgcagctaacgac
gccaagaacctgcctctgagtcaagaagaaaatattagcaagatgatttccatccatgca
gagaaagaaaccatctccaacaaagagatagatgttttgaaaagtgagcttgagaaagcg
agaagctttgaagcagaggttaaagaacgagatgagatcattgagaagattgatgctgcg
aaagaagtttttaaaatggcaaagtcccatgcgtacggctttgctgaccagtggtgtacc
aaagccatagaattggaggaacagttggaagaaaccaacatgatgaagaaatatgcctca
gtctctctggtgtctttgataaaacagctggaaggaagcaatacacgactgcaggttatg
gagtgtgaggtgattgctctcaaggataaggccaagctaatggcgacggtggggcttaag
caaagtcaagttctcaagaaatctgaacatctactcgaacctgcggaagagttgttatct
aaggttgagaaagaggatataaaattaaaaactaagcttgaaattttcaaggatgagaag
agtaagaccttgtcagagctggagaggtcgaaagaggaagaggagaagagtgagccagat
atgcagagtttagcttcagtttttcaccaagcgtcaagtgagcgtgtgttgaaaaacagg
ttgttgagtctaggtggtcagaattacaaaacacgtgaagaagataagaagctggtcatt
aagtcaacaaacgagaagtacgagaagatgcttcacgaggtggaacaaaccaataaaccg
tttgagagctcaagaggtattgttgaagatttattgaaaatggagttcaagcttaagggg
gagaatgttggattaagcttgaagaaaaaaggaaacttgataaataagttaacttctaat
cctaccaagttatggtttaaaggattaggaaatatgttatacctaatgagtttaggaaat
ttgttttatatataa
DBGET
integrated database retrieval system
