Bradyrhizobium amphicarpaeae: CIT40_15855
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Entry
CIT40_15855 CDS
T05700
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
brq
Bradyrhizobium amphicarpaeae
Pathway
brq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
brq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CIT40_15855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brq03400
]
CIT40_15855
Enzymes [BR:
brq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CIT40_15855
DNA repair and recombination proteins [BR:
brq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CIT40_15855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
ResIII
CarD_TRCF_RID
Cas3-like_C_2
RecG_dom3_C
AAA_30
UB2H
AAA_25
SecA_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AWM04702
UniProt:
A0A2U8Q3Z5
LinkDB
All DBs
Position
complement(3792095..3795199)
Genome browser
AA seq
1034 aa
AA seq
DB search
MLALHLLVQWKQSGPSGIVFLAENENRAERLGSVIHALDPSCEVVVFPRLNTLPFDQLEP
SHELAGRRASVLRRIAKSRKPLFLVSTAEAVMERLPPPASLSRLSVSLKVGGTFSEQDLE
TRLEALGYDLDDEPDYPGGALFHGQTFEIFPAGALGPFRIEHSDRAIKRIVAFDPNEHRI
IFETRELVVDPMSERLGLAGKGGKRASLFDYCGRAKWIADAGVPAHVDGWFDTIEEAAPR
AEREREYLGRRDWKQLCRGMKVLPRASSFQTIPEFSKLTSARKALRAFVEDTRRAGSRLI
LVAAHEDDLRVMERMSGLKAQRCEDWDAAVRGRGSEGALLADLDAGFVVPGKKPLVVVTA
SDVLGSRAHHPQPMARAWSAAFDHADVPEQGTVVIHLQRGLGVLDGLQTVNTGGGAMREM
IRLKFAGDNAVLVPPPDLALMWPYAAELGKLSLDKADGSTWWARRGEAEREIQVAGKALA
KHISQRRKRRGDKLVPPGSAYEKFVARFPYFTTIDQAKAIADVLDDLASGHPMDRVICGD
VGFGKTEVALRAAAAVVLSGKQVAIAVPTTVLARQHVATFQKRFAPFGIEVGNLSRATSG
AELRETREGLRSGRIKVVIGTQALTGKDVRFDDLGLVIIDEEQHFGAAEKAKLSGLAKNV
HVLMMSATPIPRTLAAGLAGFRDLSVIASPPVHRLPVATRIAPLSDAAIATALLREQRRH
GQSFLICPRIQDLDPMLARVQAVAPDLRIVCLHGRLAADEIDDRMMSFVEGRADVLLATN
IVESGLDIPRANTIVVCWPEKFGLAQLHQLRGRVGRGGIRAFAHLLTETASGQSEKRLAV
LEEFSKPGAGFAISERDLDLRGAGDLFSEEQSGHVHVFGPVLYSHLLKMASEKLDEGQAV
WVPDLNLPVADMLPETYVQSEPVRLELYARAARCKDEDDLEDLEEETARRFGPLPRGALD
FFAAARIRLECKRRGIVRLDVGPEAAAATFLPGRLRKSRGKSLQRDGDRVVHHAKMQDAP
FERVEELFELLDEG
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
gtgctggcgctgcacctgctcgtccaatggaaacagtccggaccgagcggcatcgttttt
ctcgccgagaacgagaacagggcggagcggctcggcagtgtcattcacgcgctcgacccc
tcctgcgaggtggtggtgtttccgcgcttgaacaccttgccgttcgatcagctcgagccg
tcgcacgagcttgcaggacggagagcctccgtcctgaggcgcatcgcgaaatccaggaag
ccgctctttctcgtctcgacggcggaagccgtgatggagcgactgccgccaccggcgagc
ctgtcgcgcctgagcgtgagcctgaaggtcggcggcacgttctcggagcaggatctggag
acgcgcctcgaagcgctcggatacgatctcgatgacgagccggactatcctggcggggcg
ctgttccacggccagaccttcgagatattccctgcgggcgcgctggggccgttccggatc
gagcattcggatcgcgcgatcaagcggatcgtggcgttcgatccgaacgagcacaggatc
atcttcgagaccagggagctggtcgtcgatcccatgtcggagcggcttggccttgccggc
aaaggcggcaagcgcgccagcctgttcgactattgcggacgcgccaaatggatcgccgat
gcgggcgttccggcacatgtcgacggctggttcgatacgatcgaggaggccgcgccgcgt
gcggagcgtgagcgcgaatatctcggacgccgcgactggaagcagctctgccggggcatg
aaggtgctgccgcgcgcatcgtccttccagaccatccctgaattttcgaagctgacctcc
gcgaggaaggcgttgcgggctttcgtcgaagacacgcggcgggccggatcgcggctgatc
ctcgtcgcagcgcatgaggacgatctgcgcgtgatggagcggatgagcggcctcaaggcg
cagcgctgcgaagactgggacgcggccgtgcgcgggcggggcagcgagggggcgctgctg
gcggatctcgacgccggcttcgtcgtgcctgggaaaaagcctctcgtcgtcgtgaccgcc
tccgacgtgctcggcagccgcgcgcatcatccgcagccgatggcgcgggcctggagcgcg
gccttcgaccatgccgatgtgcccgagcagggcaccgtggtcatccatctccagcgcggc
ctcggcgtgctcgacggcctgcagaccgtgaacaccggcggcggcgcaatgcgggagatg
atccgcctgaagttcgccggggacaatgcggtgctggtgccgccgcccgatctcgccctg
atgtggccctacgcggccgagctcggcaagctctcgctcgacaaggcggacggcagcacg
tggtgggcgcgccgcggtgaagccgagcgcgagatccaggtggcaggcaaggcgctcgcc
aagcacatcagccagcgccgcaagcggcgcggcgacaagctggtgccgccgggatcggcc
tatgagaagttcgtcgcgcgtttcccttacttcacgacgatcgaccaggccaaggcgatc
gccgacgtgctggacgatcttgcgtccggtcacccgatggaccgggtgatctgcggcgat
gtcggcttcggcaagaccgaggtggcgctgcgggcagctgccgccgtcgtgctgtcggga
aagcaggtcgcgatcgcggtgccgacgacggtgctggcgcggcagcacgtcgcgacgttc
cagaagcgctttgcgccgttcggcatcgaggtcggcaatttgtcgcgggcgacctcgggt
gcggagctgcgcgagaccagggagggactgcgcagcggccggatcaaggtcgtgatcggc
acgcaggcgctcaccggcaaggacgtcaggttcgacgatctcggcctcgtcatcatcgac
gaggagcagcattttggcgccgcagagaaggccaagctctccggcctcgccaagaacgtc
cacgtgctgatgatgagcgcgacgccgatcccgcgcacgctcgccgcgggcctggccggc
ttccgcgacctcagcgtgatcgcctcgcccccggtgcaccggctgccggtcgcgacccgg
atcgcgccgttgtcggatgcggcgatcgcgaccgcgctgctgcgcgagcagcgccgccac
ggccagagcttcctgatctgcccgcgcatccaggatctcgatccgatgctggcgcgggtg
caggcggtggcgccggacctgcgcatcgtctgcctgcacggccgattggcagccgacgag
atcgacgaccgcatgatgagcttcgtcgagggcagggccgacgtgctgctcgcgaccaac
atcgttgagagcggcctcgacattccccgggccaacaccatcgtggtgtgttggccggag
aagttcggcctggcgcagctgcatcaattgcgcggccgcgtcggccgcggcggcatccgc
gccttcgcccatctattgaccgaaacggcgtccggacaatccgagaagcggctggccgtg
ctcgaggaattcagcaagcccggcgccggcttcgccatcagcgagcgcgacctcgatctg
cgcggcgcaggcgacctgttctccgaagagcaatccgggcacgtccatgtgttcgggccg
gtgctctacagccacctcctgaagatggcctcggagaagctcgacgaggggcaggcggtg
tgggtgccggacctgaacctgccggtcgcggacatgctgcccgagacctacgtgcagtcc
gagccggtgcgcctcgaactctatgcgcgcgccgcaagatgcaaggacgaggacgacctc
gaagatctcgaggaggaaaccgcacgccgcttcggcccgctgccaaggggcgcgctcgat
ttcttcgccgcagcccggatcaggctcgaatgcaagcggagaggcatcgtccgcctcgac
gtcgggcccgaggccgcagccgcaacgttcctgcccgggcgcctgcggaagtcgcggggc
aaatcgttgcagcgcgatggcgaccgcgtggtgcatcacgccaagatgcaggacgcgccg
ttcgagcgggtggaggagctgttcgagctgctggacgaggggtag
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