Bradyrhizobium amphicarpaeae: CIT40_27855
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Entry
CIT40_27855 CDS
T05700
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
brq
Bradyrhizobium amphicarpaeae
Pathway
brq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CIT40_27855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brq03019
]
CIT40_27855
Enzymes [BR:
brq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CIT40_27855
Messenger RNA biogenesis [BR:
brq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CIT40_27855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
AWM03475
UniProt:
A0A2U8Q111
LinkDB
All DBs
Position
6302991..6304589
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AA seq
532 aa
AA seq
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MRRAPAFDMERTPLLTSFQDFGLAEPIARALQEENYVTPTPIQTQTIPTALTGRDVVGIA
QTGTGKTASFALPILHRLLEHRIKPQPKTTRVLVLSPTRELSGQILDSFNAYGRHIRLSS
TLAIGGVPMGRQVRSLMQGVEVLVATPGRLLDLVQSNGLKLSSVEFLVLDEADRMLDMGF
INDIRKIVAKLPIKRQTLFFSATMPKDIAELANAMLRDPARVAVTPVSSTVERINQRIIQ
VDFSAKPAFLTKLLKDEPVNRALVFTRTKHGADKVVKSLEKAGIPASAIHGNKSQNHRER
TLAQFRSGEIRTLVATDIAARGIDVDGISHVINFDLPNVPETYVHRIGRTARAGADGTAI
SLVAGGEELSYLRDIERLIKVALPREDLRTDAGRRDAGAPAPQQRQGRGGRPGQRPQGAR
HGEGRHGDGRRSEERHSDGRHHTAGKQGDGRPGESRHGGEARHADGRPGNGPNASKGSRR
PRSGGKAHSPQNGRPEQRSVHSAGAADGIQGVAFLRRESRPNGQPNRKPHSH
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgggcgcccgcttttgacatggaaagaacccctcttttgacttcgtttcaggac
ttcggcctcgccgaaccgatcgcgcgcgctcttcaagaagagaattacgtcacccccacc
cccatccagacccagaccattcccacggcgctgaccggccgcgacgtcgtcggtatcgcc
cagaccggaaccggcaagaccgcgtccttcgcgctgccgattctgcaccgcctgctcgag
caccgcatcaagccgcagcccaagaccacgcgcgtcctggtgctgtcgccgacccgcgaa
ctgtccggccagatcctcgacagcttcaatgcctatggccgccacatccgcctgtcctcg
acgctcgccatcggcggcgttccgatgggccgtcaggtccgctcgctgatgcagggcgtc
gaagtgctggtcgccacccccggccgcctgctcgacctcgtgcagagcaacgggttgaaa
ctgtcgagcgtcgaattcctcgtgctcgacgaggccgaccgcatgctcgacatgggcttc
atcaacgacatccgcaaaatcgtcgccaagctgccgatcaagcggcagacgctgttcttc
tcggccaccatgccgaaggacatcgccgagctggcgaacgcgatgctgcgggatccggcc
cgcgtcgccgtgaccccggtgtcctcgaccgtcgagcgcatcaaccagcgcattatccag
gtcgatttctccgccaagcccgccttcctgaccaagcttctgaaagacgagccggtcaac
cgcgccctggtcttcacccgcaccaagcacggcgcggacaaggtggtgaaatcgctcgag
aaggccggcatccccgccagcgccatccacggcaacaagtcgcagaaccatcgcgaacgg
accctggcccagttccgctcgggagagatccgcaccctggtcgccaccgacatcgccgcc
cgcggcatcgacgtcgacggcatcagccacgtcatcaatttcgacctgcccaacgtgccg
gaaacctacgtccaccgcatcggccgcaccgcgcgcgccggcgccgacggcaccgcgatc
tcgctggtcgcaggcggcgaggagctcagctatctccgcgacatcgaacggctgatcaag
gtggcactgccgcgcgaagatctccgcaccgacgccggccgccgcgatgcgggcgctccc
gcgccgcagcaacggcagggccgcggaggccgcccgggccagcgtccgcaaggcgcaagg
catggcgaggggcgccacggtgacggacgtcgtagcgaggaacgacattccgacggacgc
caccataccgccggcaagcagggcgatggacgccccggtgaaagccgacatggcggcgaa
gcgcgacatgctgacgggcggcccggcaatggcccgaacgcctcgaaggggtctcgtcgt
ccgcgctctggcgggaaggcgcattctccccaaaacggccgcccggaacagcgttccgtg
catagcgccggggcggctgatgggatacaaggcgtggcctttttgcgccgtgagagtcgg
ccgaacggccaaccgaaccgcaaaccccattcgcactag
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