Bradyrhizobium amphicarpaeae: CIT40_31515
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Entry
CIT40_31515 CDS
T05700
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
brq
Bradyrhizobium amphicarpaeae
Pathway
brq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CIT40_31515 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brq03019
]
CIT40_31515 (pnp)
03016 Transfer RNA biogenesis [BR:
brq03016
]
CIT40_31515 (pnp)
Enzymes [BR:
brq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CIT40_31515 (pnp)
Messenger RNA biogenesis [BR:
brq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CIT40_31515 (pnp)
Transfer RNA biogenesis [BR:
brq03016
]
Prokaryotic type
tRNA degradation factors
CIT40_31515 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
OB_RRP5_4th
DUF5813
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
AWM04112
UniProt:
A0A2U8Q2A7
LinkDB
All DBs
Position
57207..59363
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AA seq
718 aa
AA seq
DB search
MFNKHSVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKSPREGVDFLPLT
VDYQEKTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIVTVLSH
DMENDPDIVALVASSAALTLSGAPFKGPIGAARVGFANDEFILNPTLDEMVDTQLDLVVA
GTADAVLMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPREVTTIDNSA
LEKEMLGLVEQELRAAYAIPVKQDRYAAVGKVKEKVIAHYFPEGQEPKYDKLRISGVFKE
LEAKIVRWNILDTGKRIDGRDSKTVRNIVAEVGVLPRAHGSALFTRGETQAMVVTTLGTG
EDEQYIDALSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHH
EFPYTTRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEDKRFAVLS
DILGDEDHLGDMDFKVAGTEQGITSLQMDIKIEGITEEIMKVALAQAKDGRIHILGEMAK
ALTNARAELGEYAPRIETFKIATDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS
SDGEAMKAAIKWIKSIASDPEVGQIYDGTVVKVMEFGAFVNFFGSKDGLVHISQLASARV
QKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQTTGEDLEGKVGEGEKAPREAAGE
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgttcaataagcattcagtcgagatcgactggggcggacgccctctcaagctcgaaacc
ggcaagatcgcccgccaggccgatggcgccgtcgtcgccacctatggcgagaccgtggtt
cttgccaccgtcgtcgccgcgaagtcgccgcgcgaaggtgtcgacttcctgccgctgacc
gtcgactaccaggaaaagacctacgccgcgggccgcattcccggcggctatttcaagcgc
gagggccgtccgaccgagaaggagacgctggtctcccgcctgatcgaccgtccgatccgt
ccgctgttcgtcgacggctggcgcaacgagacccaggtgatcgtcaccgtgctctcgcac
gacatggaaaacgaccctgacatcgtcgcgctggtggcctcgtcggcggcgctgaccctg
tcgggcgcgccgtttaagggcccgattggagctgcccgcgtcggcttcgccaatgacgag
ttcatcctcaacccgacgctcgacgagatggtcgacacccagctcgacctcgtcgtcgcc
ggcactgccgacgcagtgctgatggtggaatcggaagccaaggagctgaacgaagacatc
atgctcggcgccgtgatgttcggccatcgccacttccagccggtcatcaacgcgatcatc
gagctcgccgagaaggccgccaaggagccgcgcgaagtcaccaccatcgacaattcggcg
ctcgaaaaggaaatgctcggcctcgtcgagcaggaactgcgcgccgcctacgccattccg
gtcaagcaggatcgctacgccgcggtcggcaaggtcaaggaaaaggtgatcgcccattac
ttccccgaagggcaggagccgaaatacgacaagctgcgcatctccggcgtgttcaaggag
cttgaggcgaagatcgttcgctggaacatcctggacaccggcaagcgcatcgacggccgc
gattccaagaccgtgcgcaacatcgtcgccgaagtcggcgtgctgccccgcgcccacggc
tcggcgctgttcacccgcggcgagacccaggcgatggtcgtgaccacgctcggcaccggc
gaagacgagcagtacatcgacgcgctgtcgggaacgtacaaagagacgttcctgctgcac
tacaatttccctccctactcggtcggtgagaccggtcgcctcggcggcaccaagcgccgc
gagatcggccacggcaagctggcctggcgcgcaatccacccggtgctgccgccgcatcac
gagttcccctacaccacgcgcgtggtgtcggagatcaccgagtcgaacggctcgtcctcg
atggcttcggtctgcggcgcctcgctcgcgctgatggatgccggcgtgccgttgaagcgg
ccgaccgctggtatcgcgatgggcctgatcctcgaagacaagcgcttcgcggttctctcg
gacatccttggtgacgaggatcatctcggcgacatggacttcaaggtcgccggcaccgag
cagggcatcacctcgctccagatggacatcaagatcgagggcatcaccgaagagatcatg
aaggtggcgctcgcccaggccaaggatggtcgcatccacatcctcggcgagatggccaag
gcgctgaccaacgcccgcgctgagctcggcgaatacgcgccgcgcatcgagaccttcaag
atcgccaccgacaagatccgcgaagtgatcggcaccggcggcaaggtgatccgcgagatc
gtcgagaagaccggcgccaaggtcaacatcgaggacgacggcaccgtgaaggtcgcctcc
tccgacggcgaggcgatgaaggccgcgatcaagtggatcaagtcgatcgcctccgatccg
gaagtcggccagatctatgacggcaccgtcgtcaaggtgatggagttcggcgccttcgtg
aacttcttcggctccaaggacggtctcgtccacatcagccagctcgcttcggcgcgcgtg
cagaagacctccgacgtcgtcaaggaaggcgacaaggtcaaggtcaagctgctcggcttc
gatgatcgcggcaagacccgcctgtcgatgaaggtggtcgaccagaccaccggcgaagac
ctcgagggcaaggtcggcgagggcgaaaaagctccgcgcgaagccgccggcgagtaa
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