Bradyrhizobium cosmicum: S23_31050
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Entry
S23_31050 CDS
T01796
Symbol
rnr
Name
(GenBank) exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
brs
Bradyrhizobium cosmicum
Pathway
brs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
S23_31050 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brs03019
]
S23_31050 (rnr)
03016 Transfer RNA biogenesis [BR:
brs03016
]
S23_31050 (rnr)
Enzymes [BR:
brs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
S23_31050 (rnr)
Messenger RNA biogenesis [BR:
brs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
S23_31050 (rnr)
Transfer RNA biogenesis [BR:
brs03016
]
Prokaryotic type
tRNA degradation factors
S23_31050 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
BAL76311
UniProt:
A0AAI8MDE0
LinkDB
All DBs
Position
complement(3188897..3191254)
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AA seq
785 aa
AA seq
DB search
MKRKNDRGFPDRAAIVAFIKANPGKVGTREIAREFGLKNADRIELKRMLRELADDGLVKK
KRRTISEPDSLPSTLVADITGRDADGELIAAPTEWDEVESGEPPKILIVLPRRPKPGTAA
GSGDRVLLRVERLDESEGPAYRGHIIKVFDKTRSRILGVFRELPEGGGRLIPVDKKGADR
ELNIAAADTHGAKDGDLVSVDIIRSRGFGLASGRVKEKLGSVKSEKAISLIAIYAHDIPL
QFRPAAEHEAEAAEPPNLKGREDWRDVPLVTIDPPDAKDHDDAVHAQADPDPNNKGGFIV
DVAIADVSFYVRPGTALDRDALDRGNSVYFPDRVVPMLPERISNNLCSLVPGEPRGALAV
RMIIAPDGRKRSHSFHRILMRSAAKLSYAQAQAAIDGRPDDTTGPLLDPILKPLYAAYAC
VKRARDERDPLNLDLPERKILLKSDGTVDRVIVPERLDAHKLIEEFMILANVAAAEMLEK
KSLPLIYRVHDEPTLEKVHALQEFLKTLDVPFAKSGALRPALFNSVLAQLEGHDHFPLVS
EVVLRAQAQAEYSSENYGHFGLNLRRYAHFTSPIRRYADLVVHRALVRALGLGEGALPDT
ETPETLSEVAAHISVTERRAMKAERETVDRLIAHHLADRIGATFQGRVSGVTRAGLFVKL
AETGADGLIPIRSLGTEYFNYDEGRHALVGTRSRTMYQLGDVVDVRLIEAAPIAGALRFE
LLSSSSETAPRDGRQPGPQRRPSFKAQPGRSPDRKRKPAKPKSGKPKKNKGKNKGKGGGQ
KGKAW
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacgcaagaatgaccgtggctttcccgaccgggcagccatcgtcgccttcatcaag
gcaaatcccggaaaggtcgggacccgcgaaattgcgcgcgagttcggcctgaagaacgcc
gatcgcatcgagctcaagcgcatgctgcgcgagctcgccgacgacggcctcgttaagaag
aagcgccggacgatttcggagccggacagcctgccatcgacgctggtcgccgacatcacc
ggccgcgacgctgacggcgagctgatcgccgcccccaccgaatgggacgaggtcgagagc
ggcgagccgcccaagatcctgatcgtattgccgcgccggccgaagcccggcaccgcggcc
ggaagcggcgaccgcgtgctgctgcgcgtcgagcgcctggacgagagcgaaggcccggcc
taccgcggccacatcatcaaggtgttcgacaagaccaggagccgcatcctcggcgtcttc
cgcgagctgcccgaaggcggcggacggctgatcccggtcgacaagaagggggccgaccgc
gagctcaacatcgccgcggccgacacccacggggcgaaggacggcgacctcgtcagcgtc
gacatcatccgctcgcgcggctttggcctcgcctcgggccgcgtcaaggagaagctcggc
tcggtcaagtccgagaaggcgatcagcctgatcgcgatctacgcgcacgacattccgctg
caattccgccccgcggccgagcatgaagccgaagccgcggagccccccaatctgaaggga
cgcgaggactggcgcgacgtcccgctcgtcaccatcgatccgccggatgccaaggatcac
gacgacgcggtgcatgcgcaagccgacccagacccgaacaacaagggcggcttcatcgtc
gacgtcgccatcgctgatgtgagcttctacgtccggccgggcaccgcgctcgaccgcgac
gcgctcgaccgcggcaattcggtctatttccccgaccgcgtcgtgccgatgctgcccgaa
cgcatctccaacaatctctgctcgctggtgccgggcgagccgcgcggcgcgctcgcggtg
cggatgatcatcgcgcctgacgggcgcaagcgctcgcacagcttccaccgcatcctgatg
cgctcggccgccaagctgagctacgcgcaggcgcaggccgcgatcgacggccggccggac
gacaccaccggccccctgctcgatccgatcctgaagccgctctatgcggcttacgcctgc
gtcaagcgcgcccgcgacgagcgcgatccgctcaatctcgatctgcccgagagaaaaatc
ctcttgaagagcgacggcacggttgatcgcgtcatcgtcccggagaggctcgatgcgcac
aagctgatcgaggagttcatgatcctcgccaacgtcgcggcggcggagatgctcgagaag
aagtcgctgccgctgatctaccgcgtgcacgacgagccgacgctagaaaaagtccacgcg
ctccaggaattcctgaagacgctcgacgtccccttcgcgaaatcaggcgcgctacgcccg
gccctgttcaacagcgtgctggcccaactcgaaggccacgaccatttcccgctggtcagc
gaggtcgtgctgcgcgcgcaggcgcaggccgaatattcgtcggaaaattacggtcatttc
ggcctgaacttgcgccgctatgcgcatttcacctcgccgatccgccgctatgccgacctc
gtcgtgcaccgcgcgctggtccgcgcgctcgggcttggcgagggtgccctgcccgacacc
gagacgccggaaaccctgagcgaggtcgctgcccacatctcggtgaccgagcggcgcgcg
atgaaggccgagcgcgagaccgtcgaccgcctgatcgcccatcacctcgccgaccgcatc
ggcgcgaccttccagggccgcgtctccggcgtcacgcgcgccggcctgttcgtcaagctg
gccgagaccggcgcggatggcctgatcccgataaggtccctcggcacggaatatttcaac
tatgacgagggccgccacgccctcgtcggcacgcgcagccgcaccatgtatcagctcggc
gacgtggtcgacgtccgtctgatcgaagccgctcccatcgccggagcgctgcgcttcgag
ctgctgtcgtcctccagcgagaccgcgccgcgcgatggcaggcaacccggtccgcaacgc
cgcccctcgttcaaggcgcagcccggacgcagcccggacagaaaacgcaagccggcgaag
ccgaaatccggcaagccgaagaagaacaagggcaagaacaagggaaaaggcggggggcag
aaaggcaaggcatggtag
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