Brevibacillus ruminantium: NDK47_01420
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Entry
NDK47_01420 CDS
T09631
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
brum
Brevibacillus ruminantium
Pathway
brum03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
brum00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NDK47_01420 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brum03021
]
NDK47_01420 (rpoB)
03400 DNA repair and recombination proteins [BR:
brum03400
]
NDK47_01420 (rpoB)
Enzymes [BR:
brum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NDK47_01420 (rpoB)
Transcription machinery [BR:
brum03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NDK47_01420 (rpoB)
DNA repair and recombination proteins [BR:
brum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NDK47_01420 (rpoB)
BRITE hierarchy
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
USG66039
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All DBs
Position
268119..271658
Genome browser
AA seq
1179 aa
AA seq
DB search
MAGKVVQSGRHRQRRTYSRINEVLGLPNLIEIQQKSYQWFLDEGLREMFQDISPIQDFTG
NLVLEFIDYSLGEPKYDVDESKERDVTYAAPLRVKVRLLNKETGEVKEQEVFMGDFPLMT
ETGTFIINGAERVIVSQLVRSPSVYYNTKVDKNGKQTFTATVIPNRGAWLELETDAKDVI
YVRIDRTRKIPVTVLLRALGFGSDIEILNLLGEDEYIKNTLEKDNTDSTEKALIEIYERL
RPGEPPTVENAKSLLISRFFDPKRYDLASVGRYKMNKKLHLKNRLYNQRLAESLVDPSTG
EIIADAGQMIDRRILDRILPLLEDRVAYLDVRTHGGVLEEESIRLQSINIFSPLDDGKVI
KVIGNGNVDKSFKHITPADIVAAINYFMNLLHGVGSTDDIDHLGNRRLRSVGELLQNQFR
IGLSRMERVVRERMSIQDQNQITPQALINIRPVIAAIKEFFGSSQLSQFMDQTNPLAELT
HKRRLSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSSFARINDYG
FIETPRRKIDPETGFVLDEIVYLTADEEDVFNVAQANQPLDDNGRFHNDMVICRRKGDIL
SVPRDKVDYMDVSPKQVVSVATALIPFLENDDANRALMGSNMQRQAVPLLIPQAPFVGTG
MEHKAAQDSGVAIVAKHPGQVERVTAREIWVRRYKEIDGKKVAGDIDKYKMHKFIRSNQG
TCVNQRPIVQKGDWVEKGDIIGDGPSTEKGELALGRNVIVAFMTWEGYNYEDAILLSEKL
VKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALKNLDERGIVRVGAEIQDGDI
LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGSGIVVDVKVFTRENGDEL
PPGVNQLVRVYIAQKRKISVGDKMAGRHGNKGVIARIMPEEDMPFLPDGSPVEIVLNPLG
VPSRMNIGQVLETHLGMAAKMLGIHVATPVFDGARQEDVFETLEEAGLDRDGKTILYDGR
TGEPFDRRVTVGCVYMLKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW
ALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKELQSLGMD
VKILSEDEQEIEMREMEEEDEGNGEKLNLVLEGGSLDDE
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggtaaagtagttcaaagtggccgacaccgccagcgtcgtacgtattcgcgtatt
aacgaagtgctgggccttccaaatctgatcgagattcagcaaaagtcttatcagtggttc
ctggacgaaggtttgagagagatgtttcaagacatttctcccattcaggacttcactggt
aatctcgtgctggaatttatcgattacagcttgggtgagcccaagtatgacgtggacgag
tcgaaagaacgtgacgtcacctatgcagcgcctctgcgcgtgaaggtccgtttgcttaac
aaagagacgggcgaagtgaaggaacaagaagtcttcatgggcgattttccgctcatgacc
gaaacgggaaccttcattattaatggggctgagcgtgtcattgtcagccagcttgttcgt
tcccccagtgtctattacaacaccaaagtggacaaaaacgggaagcagacctttacagct
accgttattccaaaccgtggtgcatggctggagctggaaacggatgcgaaggacgtcatt
tacgtccgtattgaccgtacccgtaaaatcccggtaacggttcttttgcgcgcacttggc
tttggttccgacatcgagattctgaacctgctgggtgaggacgagtatatcaaaaatacg
ctggaaaaagacaataccgattctacggaaaaggcgcttatcgaaatctacgagcgtctg
cgtccgggtgagccgccgacagtggagaacgcgaagagtctcttgatttctcgtttcttc
gatccgaagcggtacgatctggcttctgtagggcgttataaaatgaacaagaagcttcac
ctgaaaaatcgtctttacaatcaacgattggctgagtcgttggtagacccgagtacaggt
gaaatcattgcagatgccggtcaaatgattgaccgtcgtatcctggaccgcattcttcct
ttgctggaagatcgcgttgcatacctggatgtccgcacgcatggcggcgttctggaagag
gaatcgatccgtctgcaatccatcaacattttctctccgcttgacgacggcaaagtcatc
aaggtcatcggaaacggaaatgtagacaaatccttcaaacatattacgccggctgacatc
gtcgcggcgatcaactatttcatgaacctgctccatggcgttggttccacggatgatatc
gaccacctgggcaaccgccgcctgcgttctgtcggagagctcttgcagaaccagttccgc
atcggtctgtcccgtatggagcgcgtggttcgcgagcgcatgtcgattcaggaccaaaac
cagatcacgccgcaagcgctgatcaacatccgtccggtaatcgcagcgatcaaggagttc
ttcggaagctcccagctgtcccagttcatggatcagaccaacccgcttgctgagctgacg
cacaaacgtcgtctctccgcactcggtcccggcggtttgactcgtgagcgtgctggcttt
gaagtgcgtgacgttcaccactctcactatggccgcatgtgtccgattgagacgcccgag
ggtccgaacatcgggctgatcaactccctgtcttcctttgcgagaatcaatgattatggt
ttcattgagactcctcgacggaagattgacccggagacgggcttcgtactggacgaaatc
gtctacctgacagcggacgaggaagatgtgttcaacgtcgctcaggcaaaccagcctctc
gacgataatggacgtttccacaacgatatggttatttgccgacgcaaaggcgatatcctg
agtgttcctcgcgacaaggtcgattatatggacgtatctccaaagcaagttgtttcagta
gcgaccgcgttgattccgttcctggagaacgacgacgccaaccgcgcactgatgggttcc
aacatgcagcggcaggccgttccgctactgattccgcaagcgccgtttgtcggtaccggt
atggagcataaagcagcgcaagactccggtgtggccatcgtagccaaacacccgggtcag
gtagagcgtgtaactgcacgtgaaatctgggtgcgccgctataaagagatcgacggcaaa
aaagtagccggcgatatcgacaaatataaaatgcacaaatttatccgttcgaaccagggc
acctgcgtcaaccagcgtccgatcgttcaaaaaggcgactgggtagagaagggtgacatc
atcggtgacggtccgtccacggaaaagggcgaactggcactcggccgcaacgtcattgtt
gcgtttatgacctgggaagggtacaactacgaggatgccatcctgctcagtgaaaaactg
gtgaaggatgacgtgtacacctcgattcatatcgaagaatacgagtccgaagcccgcgat
accaagctggggccggaagagattacccgcgacattccaaacgtcggggaagaggcgctg
aagaatctcgacgagcgcggtattgttcgcgtcggggcagagattcaagatggcgatatt
ctcgtgggtaaggtaacaccaaaaggggttaccgagctgacggcggaagagcgcttgctc
catgccatcttcggtgaaaaagctcgtgaagtccgcgatacatccctccgtgtgccgcat
ggtggttctggtatcgttgtcgacgtgaaagtattcactcgtgaaaacggtgatgaattg
ccgccaggcgtgaaccagctcgttcgtgtctacatcgctcaaaaacggaaaatctccgtg
ggtgacaaaatggccggccgacatggtaacaaaggggttattgcccggatcatgcctgag
gaagatatgccgttcctgccggatggctctcctgtcgaaatcgtgctcaatccgctgggc
gttccgtcccggatgaacatcggacaggtgctggagacgcatctgggtatggctgcgaaa
atgctcggtatccatgtagcgacgccggtatttgatggagcacgccaggaggatgtgttc
gagacgctcgaagaagctggtctcgaccgcgacggaaaaaccattctgtacgatggccgc
acaggtgaaccgtttgaccgccgtgtaacggtgggctgcgtgtacatgctgaagctggct
cacttggtagacgacaagatccacgcccgttctactggtccgtactcgctcgttacgcag
cagccgctgggtgggaaagcccaattcggtggtcagcgtttcggggagatggaggtttgg
gcgctggaagcatacggtgccgcctacaccctgcaagagattcttactgtcaagtcggac
gacgtcgttggtcgtgtgaagacctacgaagcgatcgtcaaaggggaaaacgtgccggag
ccaggtgttcctgagtccttcaaggttctcatcaaggaactgcaaagcttgggtatggac
gtgaaaatcctgtccgaagacgagcaggaaattgaaatgcgtgaaatggaagaagaggac
gagggcaacggcgaaaagctgaacctcgtacttgaaggcggaagcttggacgacgagtaa
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integrated database retrieval system
