Brevibacillus ruminantium: NDK47_01425
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Entry
NDK47_01425 CDS
T09631
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
brum
Brevibacillus ruminantium
Pathway
brum03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
brum00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NDK47_01425 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brum03021
]
NDK47_01425 (rpoC)
03400 DNA repair and recombination proteins [BR:
brum03400
]
NDK47_01425 (rpoC)
Enzymes [BR:
brum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NDK47_01425 (rpoC)
Transcription machinery [BR:
brum03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NDK47_01425 (rpoC)
DNA repair and recombination proteins [BR:
brum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NDK47_01425 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Nro1_C
Motif
Other DBs
NCBI-ProteinID:
USG68306
LinkDB
All DBs
Position
271691..275338
Genome browser
AA seq
1215 aa
AA seq
DB search
MDVNNFEYMKIGLASPDKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWECH
CGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDMS
PRSLEEVIYFASYVVTDPGDTPLDKKQLLSEKEYRNYREKYGHSFQAMMGAEAIKRLLQE
IDLEKEVETLKEDLKTAQGQRRNRAIKRLEVLEAFRNSGNRPDWMVLDVLPVIPPELRPM
VQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPDIIVQNEKRMLQEAVDALIDNGRR
GRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKEM
ALELFKPFVMKELVAKGLAHNIKSAKRKVERVQPEVWDVLEDVIREHPVLLNRAPTLHRL
GIQAFEPVLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLAAQNILN
PKDGKPVVTPSQDMVLGSYYLTLEREGDIGEGTVYRDPHDAIASYQNGFISLHTRIALPA
KELNKDSFTEEQRNALFVTTVGKLIFNEIFPPDLPFINVPTKGNLQKGVPNDYFIFDKGV
NVKEFIANLPDQGAVKKGFLGTIISECFRRFGTMETSKILDKIKELGFMYSTKAGITIAV
ADIVVPEQKKDILDEADQKVQTVMAQYRRGLITEDERYDRVISIWSKAKDEVTEVLMKSM
DKFNAIYMMANSGARGNVSQITQLAGMRGLMANPSGRIIELPIKSNFREGLTVLEYFIST
HGARKGLADTALRTADSGYLTRRLVDVAQDVIVREIDCGTDKGIRVTAIKDGKEEIEKLI
DRLIGRTCFETVRHPETGEVIIGRNEEITEEIAEVIEKAGITEVYIRNVLACRTSHGVCK
RCYGRNLATGDEVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELF
EARNPKGQAVISEIDGEVIDIREGKDRREIEVRGEAENKVYAVPYGSRIKVAVGTKLSAG
DELTEGSVDPKEMLKVRGQRGVSNYILQEVQKVYRMQGVEINDKHVEVMIRQMLRKLRVI
DSGETDLLPGSYVEVHEFEQANAKAFMEGKSPAVGRPVLLGITKASLETDSFLSAASFQE
TTRVLTDAAIKGKVDRLLGLKENVIIGKLVPAGTGMSRYRNIKVQSRADYEENREAEGAV
RVGEDEGAVRVGTLS
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atagacgtgaacaacttcgaatatatgaagatcggcctggcttccccggacaagattcgc
tcttggtccttcggggaagtgaagaagccggaaacgatcaactaccgcacactgaagccg
gagaaggacggtttgttctgtgaacgcatcttcggtccgaccaaggactgggagtgtcat
tgcggaaaatacaaacgcgttcgttacaaaggcgttgtgtgtgatcgatgcggtgtggaa
gtaacccgcgctaaagttcgccgtgagcggatggggcatatcgaactggctgccccagtc
tctcacatctggtatttcaaaggcatcccgagccgcatgggtcttgtcctggacatgtcg
ccgcgctctctcgaggaagtcatctattttgcatcctacgtggtaaccgatccgggcgac
acaccgcttgataaaaagcagctgttgtctgaaaaggaataccgcaactaccgggaaaaa
tacggccactctttccaagcgatgatgggtgcagaggcgatcaagcgtctgcttcaggaa
atcgatctggaaaaagaagtggaaacgctgaaggaagacctgaaaacagcacaaggccaa
cgccgcaaccgcgcgatcaagcgtttggaagtgctggaggcattccgcaactccggcaac
cgtcctgactggatggttctggatgtgctgccggtcattccgccggagctgcgtccgatg
gtacagctggacgggggccgctttgcaacctctgacctcaatgacctgtatcgtcgcgta
atcaaccggaataaccgtctgaagcgcctgcttgagctcggcgcaccggacatcatcgtg
caaaacgaaaagcggatgctgcaggaagcagtggacgcattgattgataacggtcgtcgc
ggccgtccggttacaggtccgggcaaccgtccattgaaatccctcagccacatgctgaaa
gggaaacagggacgtttccgtcaaaacctgctgggtaaacgtgttgactactccggtcgt
tccgttatcgtagtcggaccaaacctgaagatgtaccagtgcggtctgccgaaggaaatg
gcgctggagctgttcaagccatttgtgatgaaagaactggtggccaaaggcctcgcgcac
aatatcaagagcgcgaagcgcaaggtagagcgcgttcagcctgaggtgtgggatgtactc
gaagacgtcatccgcgaacacccggtgctcttgaaccgcgcccccaccctgcaccgtctg
ggtatccaggcgttcgaaccggtactcgttgagggccgtgcgatccgtctgcatccgctg
gtttgtacggcatacaacgccgactttgacggtgaccagatggcggtacacgtgccgctt
tccgctgaggcgcaggcggaagcccgcatcctcatgctggcggcgcaaaacatcctgaac
ccgaaagacggtaaaccggttgtaactccttctcaggacatggtactcggttcgtactat
ttgaccctggagcgcgagggagatatcggggaaggtaccgtataccgcgatccgcacgat
gccatcgcttcgtatcaaaacgggttcatcagcttgcatacccggattgccctgccggca
aaagagctgaacaaagacagctttactgaagaacagcgcaatgcactcttcgtgacgacc
gtagggaagctgattttcaacgaaatcttcccgccagatctgccgtttatcaacgttccg
acaaaaggcaatctgcaaaaaggcgtaccgaacgattactttatctttgataaaggcgtt
aacgtaaaagagtttatcgcgaatctcccagatcaaggcgccgtgaaaaagggcttcctg
ggaacaatcatctccgagtgcttccgccgctttggaacaatggaaacctcgaagattctg
gacaaaatcaaagaactgggcttcatgtactcgaccaaagccgggatcaccatcgcggtt
gcggacatcgtcgttcctgagcagaagaaggatattctcgatgaggctgatcagaaggtc
caaaccgttatggcgcaataccgccgcggtttgattaccgaagatgagcgctatgaccga
gtgatctccatctggtccaaggcgaaggacgaggtaaccgaagtactgatgaagtccatg
gataaattcaatgcgatttacatgatggccaactccggtgcccgtggtaacgtatcgcag
attacgcagcttgcaggaatgcgcggactgatggcaaacccatctgggcgaatcatcgag
ctgccgatcaaatcgaacttccgtgaaggtctgaccgtattggagtactttatctccacg
cacggtgcgcggaaaggtcttgccgatacggccctgcgtacagccgactcgggttatctg
acccgtcgtctggtagacgtggcccaagacgtgatcgtccgcgaaatcgattgcggtaca
gacaaaggtatccgtgttacggccattaaggatggcaaggaagagatcgagaagctgatc
gaccgcctgattgggcgcacctgcttcgagaccgtccgtcatccggagaccggtgaagtc
atcatcgggcgcaatgaagaaatcactgaggaaattgccgaagtcattgaaaaggctggc
attaccgaggtttatatccgcaacgtactggcttgccgcaccagccatggcgtgtgcaaa
cgctgctatggacgcaacctggcgacaggcgacgaggtggagatcggcgaagcagttggt
atcatcgctgcacagtccatcggggagccaggtactcagttgacgatgcgtaccttccat
accggtggggttgcgggtgacgatattacccaaggtttgccgcgtattcaagagttgttt
gaggcgcgcaatccgaaagggcaagccgttatttccgaaatcgacggggaagttatcgat
attcgtgaaggcaaggatcgccgtgagatcgaagttcgcggtgaggcggaaaacaaagtg
tacgccgtaccgtacggctcccgtatcaaggtagcggtcggaaccaagctgagcgccggt
gacgagctgaccgagggttctgttgacccgaaagaaatgctcaaggtacgcggtcagcgc
ggtgtatccaactacatcctgcaagaggtacaaaaagtgtaccgtatgcaaggggtagaa
attaacgacaagcacgtcgaggttatgatccgtcagatgctgcgcaagctgagagtcatc
gacagcggcgaaaccgatctcttgccaggttcttatgtagaagtgcatgagtttgagcaa
gcaaacgccaaagcctttatggaaggcaaaagccctgcggtgggccgtcccgttctgctg
gggatcaccaaggcttctctggaaacagactccttcctctctgcagcgtccttccaggag
acgacacgtgtcctgacagacgcggcaatcaaaggcaaggtagaccgtctgctcggcctg
aaagagaacgtgattatcgggaagctggttccagcaggtaccggtatgtcccgttaccgc
aacatcaaggttcagtcgcgtgctgattacgaagagaacagggaagccgaaggtgctgtg
cgcgtcggtgaagacgaaggcgcagtccgtgtaggaaccctctcataa
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