Brevibacillus ruminantium: NDK47_03950
Help
Entry
NDK47_03950 CDS
T09631
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
brum
Brevibacillus ruminantium
Brite
KEGG Orthology (KO) [BR:
brum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
brum03009
]
NDK47_03950 (rlmD)
Enzymes [BR:
brum01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
NDK47_03950 (rlmD)
Ribosome biogenesis [BR:
brum03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
NDK47_03950 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
Methyltransf_15
TRM5-TYW2_MTfase
MTS
Methyltransf_11
PrmA
N6_N4_Mtase
Methyltransf_32
Methyltransf_12
TPMT
Methyltransf_23
TPR_20
Motif
Other DBs
NCBI-ProteinID:
USG68329
LinkDB
All DBs
Position
768801..770237
Genome browser
AA seq
478 aa
AA seq
DB search
MAKTTKKRRGAQAAGKEPLDLPVRLGQIIEVEITGLSHEGAGVGRVEGYTLFVPKALPQE
KVRARVEHVKKNFGFAELLEVVEKSPSRALPPCPIYDRCGGCSLQHLAYEEQLIHKQQIV
KDNLRRIGGFKVEGEEAVIVHPTLGMSDPWRYRNKAQVPIGEQDGGLVGGFYAEKSHEII
DMNECLIQHPANDEAVNAVKEIASQLNITPYDEKNHTGLLRHVVVKVGARTGEVMVVLVT
TEAFIPQRDKLVEEIRTRLSGVKSIVHNINPARTNVIFGEKTVTLWGSDVIYDYIGPIKF
AISARSFYQVNPAQTEVLYNKTLEYAGATGTETVIDAYCGIGTISLFLAQKSRHVYGVEI
VPEAIADANRNAKLNGIENVTFETGPAEVVIPAWKEQGIRPDVIVVDPPRKGCDEALLTT
ILQMKPQRVVYVSCNPSTLARDLKVLAELYEVREVQPVDMFPHTGHVECVIGMQRIDT
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
gtggcgaagacaacaaagaaacgacgcggagcgcaggcggcggggaaagaaccgctcgac
ttgccggtgcgtcttggacaaatcatagaggtagaaataaccggattgagtcacgaagga
gcaggtgtaggccgtgtagaaggctacaccttatttgtgccgaaagcgctgccgcaggag
aaagtccgtgcccgtgtcgagcatgtgaaaaagaattttggctttgccgagctgctcgaa
gtggtggaaaagagcccgagccgtgcccttccgccctgtccgatctacgaccgctgcggc
ggttgctctcttcagcatctcgcttacgaggagcaattgattcacaagcagcagatcgtc
aaagacaatctccgccgcatcggcggctttaaagtggaaggggaagaggcggtcatcgtc
cacccgacactgggcatgagcgatccgtggagataccgcaacaaggctcaggtgcccatt
ggggagcaggacggcggtttggttggcggtttttacgcggaaaaatcacacgagattatc
gatatgaacgagtgcctgatccagcatccggccaatgacgaggcggtaaacgccgtaaag
gagatcgcctctcagttaaacataaccccatacgacgagaagaatcacacggggctgctg
cgccatgtcgtcgtcaaggttggggcgcgcaccggcgaggtcatggtggtgctggtaact
accgaggcgtttattccgcagcgggacaagctggtcgaagagatccgcaccaggctctcg
ggcgtgaaaagcatcgtgcacaatatcaatcccgcccgcaccaatgtgatttttggtgag
aaaaccgttaccctgtggggaagcgacgtcatctatgattacatcgggccgatcaaattc
gccatctctgcccgttcgttttatcaggtaaaccccgcgcagactgaggtgttgtacaac
aaaacactggagtatgcgggtgcgaccgggacggagaccgtgatcgacgcttactgcgga
attggaaccatctcgctctttttggcgcagaaatcgcgtcatgtgtacggcgtggagatt
gtgccggaggcgattgcggacgccaatcgtaatgcgaagctgaacgggattgaaaacgtg
acgtttgagacagggccggccgaagtggtgatcccggcctggaaggaacagggaattcgt
cccgatgtgatcgtagtggacccgccgcgcaaaggctgcgacgaggcgctgctcacgacg
attttgcagatgaagccgcagcgggtagtgtacgtgtcctgtaatccatcgacgctggcc
cgggatttgaaggtgctggcggagttgtatgaggtgagggaagtgcagccggtggatatg
tttccgcatacggggcatgtggagtgcgtaataggaatgcaacgaatcgatacgtag
DBGET
integrated database retrieval system
