Brevibacillus ruminantium: NDK47_19610
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Entry
NDK47_19610 CDS
T09631
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
brum
Brevibacillus ruminantium
Brite
KEGG Orthology (KO) [BR:
brum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
brum03016
]
NDK47_19610
Enzymes [BR:
brum01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NDK47_19610
Transfer RNA biogenesis [BR:
brum03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NDK47_19610
Prokaryotic type
tRNA splicing ligases
NDK47_19610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
USG64346
UniProt:
A0ABY4WI85
LinkDB
All DBs
Position
complement(3953419..3954642)
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AA seq
407 aa
AA seq
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MYQTIDSIRVWGTPLENAVSQAVTCSRHGNVVQVLLMADHHKGYSQPVGGVVVYDGQISP
SGVGYDIACGNKAVRTNLHYDEIKDKISAIMDQIAKQISFGIGRVNKERVEHELFEDDAW
YIYQQFGKHEHDSLKALAKSQLGTVGSGNHFVDLFVEETTGMVWVANHFGSRGFGHKTAS
GFLNLASGRKFSDKAPGESMDQPPSLFDLNSELGEMYFDAMTLAGKYAYAGRDFVIKQVL
DILGAEATFEVHNHHNFAWKEEHQGKEYVVVRKGATPSAPGQLGFIGGSMGDRSVIVKGV
DSQENKDAFYSTVHGAGRIMSRTEAAGRMNWKTRKRSGGKITKEQMKQAIREFGVELRGA
GTDESPFVYKKLSEVLKAHENTLEILHVLKPIGVCMAGENEFDPYKD
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgtatcaaacgattgacagtataagagtctggggaacgccgctggaaaatgccgtatcc
caggcggtaacctgctcacggcacggcaatgtcgtccaggttttgctgatggccgatcat
cataaaggatactctcagcccgtgggaggagtggttgtctacgacggacaaatctctccc
tccggtgtcgggtatgacatcgcctgcggcaacaaagcagtgcggaccaatctccattac
gatgagattaaggacaaaatctctgcgatcatggatcagattgcgaagcagatttccttt
ggcatcggtcgggttaacaaagagagggtagagcatgaattgtttgaggacgacgcgtgg
tatatctatcagcagtttggcaaacacgagcatgactccttgaaagctctggcaaaaagc
cagctgggtactgtgggcagcggcaatcatttcgtcgatctttttgtggaagaaacgaca
ggaatggtatgggtggccaatcattttggcagccgaggcttcggacacaagacggccagc
ggctttctgaatctggccagtggccggaaattttccgacaaagcgcctggggagagtatg
gaccagccgccgagcttgttcgatctgaacagcgagctgggcgagatgtatttcgatgca
atgacgctggctggcaaatacgcctatgctggccgcgactttgtgattaaacaggtgctg
gacatactcggcgccgaggctaccttcgaggtccacaaccatcataatttcgcctggaag
gaagagcatcaggggaaagagtatgtcgttgtcagaaaaggagctacaccttcggcaccg
ggacagctcggctttattggcgggagcatgggggatcggtctgtgatcgtgaaaggcgtg
gactcgcaggaaaacaaagacgctttctacagcacggtacacggcgctggccgcatcatg
agccggacggaagcagccggacggatgaactggaagacgcggaagcgcagtggcggcaag
atcaccaaagagcaaatgaagcaggccatccgtgaatttggcgtcgagctgcgcggagcc
ggcacagatgaaagtccctttgtttacaaaaagctgtctgaagtgctgaaagcgcatgag
aatacgctggagattcttcatgtcttgaaaccgatcggcgtctgtatggcgggggaaaat
gaatttgatccttacaaggattag
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