Brevibacillus ruminantium: NDK47_26205
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Entry
NDK47_26205 CDS
T09631
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
brum
Brevibacillus ruminantium
Pathway
brum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NDK47_26205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brum03019
]
NDK47_26205
03009 Ribosome biogenesis [BR:
brum03009
]
NDK47_26205
Enzymes [BR:
brum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NDK47_26205
Messenger RNA biogenesis [BR:
brum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NDK47_26205
Ribosome biogenesis [BR:
brum03009
]
Prokaryotic type
rRNA helicases
NDK47_26205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_RecD
UvrA_inter
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
USG65553
LinkDB
All DBs
Position
complement(5351330..5352835)
Genome browser
AA seq
501 aa
AA seq
DB search
MATFYEFGLDHLVARALSDMGFEEATPIQEETIPTVLQGKDLIGQAQTGTGKTAAFGIPL
VERVSDEPDLIQAVVLTPTRELAVQVAEELNKIGQYKKVTALPIYGGQDIQRQIRALKKH
PQIIVATPGRFMDHMNRRTIRLHGVEMVVLDEADEMLNMGFVDDIKAILKEMPEERQTLL
FSATMPRPIQEIARNFMKDPVTISIKAKELTVPNIQQHFMEVPEKQKFDVLCRLLDIHSP
ELAIIFGRTKRRVDELSEALNKRGYGAEGIHGDLNQAKRDSVLRKFKEGTIEVLVATDVA
ARGLDISGVTHVYNFDIPQDSESYVHRIGRTGRAGKTGLAITLVTPREIDHLRYIEKATN
RRMERKPVPTMAEAIEGQQRLTVDRLMETAGSDTLNLYRSLAEQLLEETDSVTLVAAALK
LLTKEPDTTPVRLTEESPLRVGKKKMMDFPRGRGPRSGAKRSGPGGGGGYARAGHSKGRA
PQNNRNRRDRDRDRDRDRGNF
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
ttggcaacattttatgagtttgggctcgatcatttggtggctcgggccctgagtgacatg
ggctttgaagaggccactccgattcaagaggaaacgattccgaccgtccttcagggcaag
gatttgattggacaggcgcagaccggtacgggaaaaactgcggccttcggcatcccgctg
gtggagcgggtaagtgatgagccggatctgattcaggctgtcgtcctgacgcctacccgg
gagcttgccgtccaggtagcagaagaactgaacaagatcggtcagtacaaaaaagtaaca
gcgctgcctatctacggtggtcaggatatccagcgccagattcgggctttgaaaaagcat
ccgcaaattatcgtagcgaccccaggccggttcatggatcatatgaatcgcagaacgatt
cgactgcacggtgtggaaatggttgtcctggatgaagccgatgaaatgctgaatatgggc
ttcgtggatgatatcaaagcgatcctgaaagagatgccggaggagcgccaaaccctgttg
ttctcggctaccatgccgcgtccgatccaggagattgcccgcaactttatgaaagacccg
gtcacgatctcgatcaaggcgaaggagttgaccgttcccaatatccagcagcatttcatg
gaagttccggagaaacagaagtttgacgtattgtgccgtcttctcgacattcattctccc
gagctggccattattttcggcagaaccaagcgtcgtgtcgacgaattgtctgaggccctg
aacaaacgaggctacggagcagaaggcattcacggcgatttgaatcaggcgaagcgcgac
agcgtcctgcgcaagttcaaagaaggtaccatcgaggtgctggtagccacggatgtagcc
gctcgcggtctggacatcagcggggttacacatgtctacaacttcgatattccgcaggat
tcggaaagctatgtgcaccggatcggccgtaccgggcgtgcgggaaaaacgggattagcc
attacccttgtgaccccgagagaaattgaccatttgcgttatattgaaaaggcgaccaac
cgcaggatggagagaaagccggttccgaccatggctgaggcgattgagggccaacagcgt
ctcacggtagaccgtttgatggagactgctggaagcgataccctgaatctgtaccgttcg
cttgccgagcagctgctggaggagacggattccgtaacattggtcgcagcagccttgaag
ctgctgaccaaagaaccagataccacgccggttcggttgaccgaagagtcgccgcttcgc
gtcggcaagaagaaaatgatggattttccacgaggcagaggtccgcgcagcggtgcaaaa
cggagcggtcctggtggtggcggcggctacgcaagagcgggtcattccaaaggcagagcg
ccgcaaaacaacagaaacagaagagacagagatcgcgacagagaccgagacagagggaat
ttctag
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