Brachybacterium avium: CFK39_00515
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Entry
CFK39_00515 CDS
T04950
Name
(GenBank) RNA helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
brv
Brachybacterium avium
Brite
KEGG Orthology (KO) [BR:
brv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brv03019
]
CFK39_00515
Enzymes [BR:
brv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CFK39_00515
Messenger RNA biogenesis [BR:
brv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CFK39_00515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
Helicase_C
DEXQc_Suv3
MTR4-like_stalk
AAA_30
AAA_22
nSTAND3
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ASK64577
UniProt:
A0A220U8Y7
LinkDB
All DBs
Position
complement(116887..119808)
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AA seq
973 aa
AA seq
DB search
MTSPAERYAQWRAQTERERSSPELTAFTGRYPFALDDFQLAAARVLEDGSSVLVAAPTGA
GKTVVGEFAVHLALARGHKVFYTAPIKALSNQKFGELVEWLGADRVGLLTGDTSIRPDAD
VVVMTTEVLRNMLYADSDLLIGLGFVVMDEVHYLADRLRGPVWEEVIIHLHGSVQLVSLS
ATVSNAEEFGAWLQEVRGSTEIIVSETRPVPLWQHVVVGDELLDLFVDADGEAVVSQGPG
ARGDRQVNPEIERLTAFSLPVDERTGGSRGPGYRGRKGTSGRHRPRGSGQYRPPHLRKGR
GGGSRAGGGGHPGSGPHRHDGRHPGSLRPARRPDVVELLDDAELLPAIMFIFSRAGCDGA
VQQCARARLRLTDDAERREIRAVLDEQLADIGVEDEEVLSLATFRRAALDGFAAHHAGML
PLLKTVVEALFARGLIKVVFATETLALGINMPARSVVLEKLVKFNGVDHADLTPGEFTQL
TGRAGRRGIDTEGHAVVLAGPRFDAPAVASLASKRTYPLRSAFRPTPNMAVNLLDRFDLS
RARETLETSFAQFQADRSVVGLARRARELEDTAADYRAAVTCERGDLLEHAQLQEAITER
EKTLSRARADQDRDRTRSVLGDLRRGEVIALPGGKRRGYAVVLEVDRAVLGGPQVDLLDT
EGRRRSLRPGDVPSPPAVIDRLRLPHQDSLGSSKVRKDTAAALRQRLAGQDDDARREVRR
RTARSPSTAATDEQLLALREELEAHPCSACPDLESHLRWVGRWRKSRSELEGVQRRIRGR
TSSLARQFDHLTDLLVELGYLAPDGEELRPTASGMRLRRLFSDRDLLIAQCLEQGAWAGL
DPAGLAAVVSAAVHETRRDDRAPEVIPDPVVETALVASARVAAALQAAESRHRVPPTAVP
DPAIAGIVHRWARGAHLAAALEGNDLPPGDFVRHCRQVIDLLDQLTADEELGAVARRSIR
AMRRGLVAQEIDR
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atgacctcacccgcagagcgctacgcccagtggagagcacagacggagcgcgaacgctcc
tcgcccgagctgaccgccttcaccggccgctatcccttcgcgctggatgatttccagctc
gccgccgctcgcgtcctcgaggacggcagctcggtcctggtcgccgcgcccaccggcgcc
ggcaagaccgtcgtcggcgagttcgccgtgcacctggccctggcccgcgggcacaaggtc
ttctacaccgcgccgatcaaggccctgtcgaaccagaagttcggcgagctggtggagtgg
ctgggagcggaccgggtgggactgctgaccggcgacacctcgatccgtcccgatgccgac
gtggtcgtgatgaccaccgaggtactgcgcaacatgctgtacgccgactccgacctgctc
atcgggctgggcttcgtggtgatggacgaggtgcactacctcgccgatcgactgcgcgga
ccggtgtgggaggaagtcatcatccatctgcacggttcggtgcagctggtctcgctgtcc
gccaccgtctccaacgccgaggagttcggggcctggttgcaggaggtccgcggcagcacc
gagatcatcgtctccgagacccgcccggtgccgctgtggcagcacgtcgtggtcggggac
gagctgctggacctgttcgtcgacgccgacggggaggccgtggtctcccagggtcccgga
gcgcgcggtgaccgccaggtcaatcccgagatcgaacgcctcaccgccttctccctcccg
gtcgacgaacgcaccggtgggtcccggggccccggctaccgcgggcgcaagggcaccagc
ggccgccaccgtccgcgcggatccggccagtaccgcccgccgcacctgcgtaaaggtcga
ggtggcggttcccgggccggtggtggaggccatccgggctccggaccgcaccgtcatgac
ggcaggcaccccggctccctgcgccctgcgcgacgaccggacgtagtggagctgctggac
gatgccgaactgctgcctgccatcatgttcatcttctcccgcgccggctgcgatggggcg
gtgcagcagtgcgctcgcgcccggctgcgcctgaccgatgacgccgagcgccgggagatc
cgcgcggtgctggacgagcagctcgccgacatcggagtcgaggacgaggaggtgctctcg
ctggccaccttccgccgggccgcgctggacggcttcgccgcccaccacgccggtatgctc
ccgctgctgaagaccgtcgtcgaggcgctgttcgcgcggggcctgatcaaggtcgtcttc
gccaccgagacgctggcgctgggcatcaacatgcccgctcgttcggtggtgctcgagaag
ctcgtgaagttcaacggcgtcgaccatgcggatctgaccccgggggagttcacccagctc
accgggcgggcggggcgtcgcggcatcgacaccgaggggcatgcggtggtgctcgccggt
ccccgcttcgatgccccggccgtggcgtccctcgcctcgaaacgcacctacccgctgcgc
tccgccttccggcccacgccgaacatggcggtgaacctgctggaccgcttcgatctctcc
cgagcccgggagaccctcgagaccagcttcgcccagttccaggcggaccgctccgtggtg
ggcctcgcccgccgcgcccgggagctggaggacacggccgcggactaccgcgcggcagtc
acctgcgagcgcggggacctgctggagcacgcgcagctccaggaagcgatcaccgagcgg
gagaagaccctctcccgcgcccgcgccgatcaggaccgggaccgcacccgcagcgtgctc
ggcgacctccgtcgcggggaggtgatcgccctgcccggcggcaagcgtcgcggctatgcg
gtggtgctggaggtcgaccgtgcggtgctcggcgggccgcaggtggacctgctggacacc
gagggacgccggcgcagcctccgccccggggacgtcccctcgccgcccgccgtcatcgac
cggctgcgcctgccgcaccaggactccctgggcagcagcaaggtgcgcaaggacaccgcc
gccgccctgcgtcagcgtctggccgggcaggacgacgatgcgcgccgagaggtgcgccga
cgcaccgcgcgcagtccgtcgaccgctgcgacggacgagcagctcctcgcgctgcgcgag
gagctggaggcccacccctgctccgcctgccccgacctcgaatcgcatctgcgctgggtg
gggcgctggcggaagtcccgcagcgagctggagggcgtccagcggcgcatccgcggccgc
accagctccctggcccgccagttcgaccacctcaccgatctgctggtcgagctcggctat
ctcgcccccgacggggaggagctgcgtcccaccgcgagcgggatgcggctgcgccggctg
ttcagcgaccgcgacctgctgatcgcgcagtgcctcgagcagggtgcctgggccggcctg
gacccggccgggctcgccgccgtggtctccgccgcggtccatgagacccgtcgcgacgac
cgggctcccgaggtgatccccgaccccgtggtcgagaccgcactcgtggcctcggccaga
gtggccgcggcgctgcaggccgccgagagcaggcaccgcgtgccccccaccgccgtgccg
gacccggcgatcgccgggatcgtgcaccgttgggcgcgcggcgcgcacctggccgctgcg
ctcgaggggaacgacctgccgccgggcgacttcgtgcgccactgccggcaggtcatcgac
ctgctcgatcagctcaccgccgacgaggagctcggggcggtggcccgccgttcgatccgt
gccatgcgccgaggactggtggcgcaggagatcgaccgatga
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