Brachybacterium avium: CFK39_01560
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Entry
CFK39_01560 CDS
T04950
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
brv
Brachybacterium avium
Pathway
brv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFK39_01560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brv03019
]
CFK39_01560
03009 Ribosome biogenesis [BR:
brv03009
]
CFK39_01560
Enzymes [BR:
brv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CFK39_01560
Messenger RNA biogenesis [BR:
brv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CFK39_01560
Ribosome biogenesis [BR:
brv03009
]
Prokaryotic type
rRNA processing factors
CFK39_01560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ASK64744
UniProt:
A0A220U8X3
LinkDB
All DBs
Position
complement(340379..343105)
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AA seq
908 aa
AA seq
DB search
MADSTHDTENDSSQETQGPPPARRRRRAAGAPAGAPAFTPPTVAEPESTSPRTVVASQEA
ASVEPAPSTAKRPRRRAGAPAGAPAIAAEPAPAADEVEEPVAQVTDDAVEEPAQDAPVDL
PEPEGNPVVDDLRALATARGAAAEEPTADDDRAGRREQVQMDFASLLFQAPTPQPRTTVA
PQEHAEDADADAEESHPAVGEESSEEERTSRSRRSRSRSRRSSQRDEDATEGTEGTEEDE
DDSADEDHSSSNSGANGSSRRRRRRGGRGRRGRGRGEDDGSESADGTDEAHDDSRDSGQD
EDGSDSSGNDQDNGGDSSSGSSSSRRRRRRRRSGGGNDDSGSTDDPPNTVVKVREARDEV
KAVKGSTRLEAKRQRRREGRDAGRRRNVITEAEFLARRESVKRSMVVRERPGRTQIAVLE
DDVLVEHYVAQKSQTSMVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNWDAVGL
EGQPRRIELALKSGDPVLVQVTKDPIGHKGARLTSQISLPGRYVVFVPGGSMTGISRKLP
DTERTRLKKIMRQIIPEDAGVIVRTAAEGASEQELTHDVERLRAQWDKIQKAQKSRSAPV
ALSQEPDIAIKVVRDVFNEDFTSLIVEGGKVYDDVHAYVSEVAPDLLERVTKHVGEKDVF
AKHRIDEQLLKAMDRKVYLPSGGSLVIDRTEAMTVVDVNTGKFTGSGGSLEETVTKNNLE
SAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDRTKHQVAEVTSLGLV
QMTRKRVGQGLVETFSTSCEHCHGRGLVVDAEGEHNHGGGNGAEDSSKSSRRRGRRPRNG
AKDEGEGTEHGGEETGGDVHRLEDDESSRAQARATIASIAAASGGAAPLEEPGEGAATAW
EQDAPEQG
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atggctgacagcacccacgacaccgagaacgactcgtcgcaggagacgcagggcccgcca
ccggcgcggcgccgccgtcgtgccgcaggcgccccggcgggagcgcccgcattcaccccg
ccgacagtggcggagccggagagcacctcacctcgcaccgtcgtcgcctcgcaggaggcg
gcgagcgtcgagcccgccccgtccaccgccaagcgaccccgtcgtcgcgccggggccccc
gccggggcccccgcgatcgcggccgagccggcaccggctgctgacgaggttgaagagccg
gtcgcacaggtgacggacgatgctgtggaggagcctgctcaggatgctccggtcgatctc
ccggaacccgagggcaacccggtcgtggatgatctgcgggcgctggccacggcccgtggg
gccgctgcggaggagccgaccgcggacgacgatcgcgcgggtcgtcgcgaacaggtgcag
atggatttcgcgtcgctcctgttccaggcgccgacgccgcagcctcggaccaccgtcgcc
ccccaggaacacgctgaggacgcagacgcagacgccgaggagtcgcaccccgccgtgggc
gaggagtcctcggaggaggagcgcacctcccgctcccggcgcagccgcagccgttcgcgc
cgttcctcgcagcgcgatgaggatgcgactgaggggaccgaggggaccgaggaggacgag
gacgatagcgctgacgaggaccactcgtcatcgaactcgggtgcgaacggcagctcccgc
cgccggcggcgtcgcgggggccgtggccgtcgcggtcgtggccggggcgaggacgacggc
agcgagagcgcggacggcaccgacgaggcgcacgacgactcccgggactccgggcaggac
gaggacgggtcggactcctccggcaacgatcaggacaacggtggggactcctcctccggc
tcctccagctcgcgccgacgtcggcgtcgtcgccggtcgggcggcggcaacgacgattcg
ggctccacggatgatccgcccaacacggtggtgaaggtccgtgaggcgcgggacgaggtc
aaggccgtcaagggatcgactcgtctcgaggccaagcgacagcgtcgccgcgaggggcgc
gatgcgggtcgccgccgaaacgtgatcaccgaggccgagttcctggcccgtcgcgaatcc
gtcaagcgctcgatggtggtgcgcgagcgccccggccgcacccagatcgccgtgctcgag
gacgatgtgctcgtcgagcactacgtcgctcagaagtcgcagacgtcgatggtcggcaac
gtctacctgggcaaggtgcagaacgtgctcccctccatggaggccgccttcgtggacatc
ggcaagggtcgcaacgctgtgctgtatgccggagaggtcaactgggacgcggtgggcctg
gagggccagccgcgacgcatcgaactggcgctgaagagcggtgacccggtgctggtccag
gtcaccaaggacccgatcggtcacaagggcgctcgcctgaccagccagatctccctgccc
ggccgctacgtggtgttcgtgcccggcggttccatgaccggcatctcccgcaagctgccc
gacaccgagcggacgcggctgaagaagatcatgcgccagatcatccccgaggacgcgggc
gtcatcgtgcgcaccgccgccgaaggggcgagcgagcaggagctgacgcatgacgtcgag
cgcctgcgcgcccagtgggacaagatccagaaggcgcagaagagccgatccgcgccggtg
gccctctcgcaggagccggacatcgccatcaaggtggtccgcgacgtcttcaacgaggac
ttcacctcgttgatcgtcgagggcggcaaggtctacgacgacgtccacgcctacgtctcc
gaggtggcgccggacctgctggagcgggtcacgaagcacgtcggcgagaaggacgtgttc
gccaagcaccgcatcgacgagcagctgctgaaggccatggaccgcaaggtctacctgccc
tcgggcggctccctggtcatcgatcgcaccgaggcgatgaccgtggtcgacgtcaacacc
ggcaagttcaccggctccggcggttccctcgaggagaccgtcaccaagaacaacctcgaa
tccgccgaggagatcgtgcgccagctgcggctgcgcgacatcggcggcatcatcgtcatc
gacttcatcgacatggtgctcgagtccaaccgagacctggtgctgcggcgcctggtcgag
tgcctgggccgggaccgcaccaagcaccaggtcgccgaggtcacctcgctcggcctggtg
cagatgacccgcaagcgcgtggggcagggtctggtcgagaccttctccacctcctgcgag
cactgccacggccgtggcctggtcgtggacgccgaaggcgagcacaatcatggcggcggc
aacggcgcggaggactcctcgaagtcctcgcggcgtcggggccggcgcccgcgcaacggc
gcgaaggacgagggcgagggcaccgagcacggcggcgaggagaccggtggcgatgtgcac
cggctcgaggacgacgagagcagccgtgcccaggcgcgggccacgatcgcctcgatcgcc
gcggcctcgggcggcgccgcaccgctcgaggagcccggggagggcgccgcgaccgcgtgg
gagcaggacgctcccgagcaggggtga
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