Brachybacterium avium: CFK39_02480
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Entry
CFK39_02480 CDS
T04950
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
brv
Brachybacterium avium
Brite
KEGG Orthology (KO) [BR:
brv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brv03019
]
CFK39_02480 (hrpA)
Enzymes [BR:
brv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CFK39_02480 (hrpA)
Messenger RNA biogenesis [BR:
brv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CFK39_02480 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
HA2_N
FtsK_SpoIIIE
T2SSE
ABC_tran
AAA_11
TrwB_AAD_bind
SLFN-g3_helicase
SRP54
Zeta_toxin
AAA_23
Motif
Other DBs
NCBI-ProteinID:
ASK64884
UniProt:
A0A220U9A6
LinkDB
All DBs
Position
complement(540217..544110)
Genome browser
AA seq
1297 aa
AA seq
DB search
MTTPSSTPDPTTPELPGPRITYPGDLPVSQRREDIQAALREHQVVVIAGATGSGKTTQIP
KMLLELGYGRRGKLIGHTQPRRIAARSVAQRIASELGEKLGEGIVGFQVRFTRETGRGTR
LKLMTDGILLAEIGRDRLLTRYDAIIIDEAHERSLNIDVIMGYLRQILPQRPDLKIVITS
ATIDPERFAEHFGRDLPSGEREPAPIIEVSGRTYPVEIRYRPLVLEPEVDEDDELEDIHS
VERDLTQAITDAVDELAAEGPGDMLVFLPGEREIREISEALTTHLGRGTKCRSALPVEVL
PLFGRLSAQDQQKIFSPPKAGTYRRIILSTNVAETSLTVPGITYVIDSGLARISRYSQRT
KVQRLPIEPISQASANQRSGRSGRTAPGIAIRLFSEEDFEGRPEFTEPEILRTALASVVL
LMTSLGLGDVESFPFVEPPASRAITDGVRLLDELGAIEDAPREPGGRRLTRVGRTLARFP
LDPRMARMLIEAHRLGALREVLIIVAAMSIQDPRERPLGQEQQAKEKHKRFEDETSDFLA
YLNLWNHLQSRRKALSNSAFRREVRSEHLHYLRIREWWDLHSQLRDMAKDVDLSLGDTDA
SPQAIHQALLAGLLSHVGLQDDRSREYAGARGARFALWPGSALAKKRPDYVMVAELVETS
RLWGRTAARIDPTWAEEAGSHVVKRSHSAPHWSSKQASAMAHQKVSLYGVPIVADRVVGY
GRIDPEAAREIFIQHALIEGDWRTRHHFFRDNQALIKELEELEAKTRRRDLLISDEQLFR
FYDERIPVSVVSGRHFDTWWKTQRHETPELLTLTEQDLLAAEEGVAETIAAEFPDTWVQG
DITLPLSYSFGAVGAKGTDGVTATVPLAVLNRLQPRGFDWLVPGMREELVTELIRSLPKP
IRRHLVPAPERAKAVAATLHDDDPDAGEVFLEAVADELVALPGVPEDLPLYGPEFDTAKL
PAHLRMHFRVVDDKGREIGGGDDLEQLKARLKKRVDASVSTRADSLARTDLPGFPAQGVP
AVHESTVGGLKVTGYPALVARRGEDGRLQQVDLAVLATADEQALAHREGVISLLDRDLGA
DLGTVLNALPNPTKLAVAGSDYASTAALLADASRAATVHLAGTAEVRTAAEYEALLEQVR
SGHDALAAQAVKDAAAALATSAKLHKELSRSPSLSVLSHLTQIREHAASLLGDGFISRTG
ITHLPDLRRYLEADAIRLDKLPANPRRDEQLAWQIGDLTQHWATQRAKLSARRRAEPDVR
EIDWLLEEFRVSLFAQTLGTRQTVSDKRIRSAIAALA
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgccttcctcgacgcccgacccgaccacccccgagctccccggcccgcgcatc
acctacccaggggacctccccgtctcccagcgccgcgaggacatccaggctgccctgcgc
gagcaccaggtggtggtcatcgccggtgccacgggctccggcaagaccacgcagatcccc
aagatgctgctcgaactcggctacggccggcgcgggaagctgatcggccatacccagccg
cgccggatcgccgcccgttcggtcgcccagcgcatcgcgagcgagctcggcgagaagctg
ggggaggggatcgtcgggtttcaggtccgcttcacccgcgagaccggtcgcggcacccgg
ctgaagctcatgaccgacggcatcctgctggcggagatcggccgcgaccgcctgctgacc
cgctacgacgcgatcatcatcgacgaggcgcacgagcgctcgctgaacatcgacgtgatc
atggggtacctgcgccagatcctgccccagcgaccggatctgaagatcgtcatcacctcg
gcgaccatcgatcccgagcgcttcgccgagcatttcggccgcgacctcccctcgggtgag
cgggagcccgcgccgatcatcgaggtctccggccgcacctatcccgtcgagatccgctac
cgtccgctggtgctggaaccggaggtcgacgaggacgacgagctcgaggacatccattcc
gtcgagcgcgacctcacccaggccatcaccgacgccgtcgacgagctcgcggccgagggc
cccggcgacatgcttgtgttcctgcccggcgagcgggagatccgggagatctccgaggcc
ctgaccactcatctgggtcggggcaccaagtgccgctccgccctgccggtcgaggtgctg
ccgctgttcggtcgcctctccgcccaggatcagcagaagatcttctccccgccgaaggcc
ggcacctatcgccgcatcatcctgtccaccaacgtcgccgagacctcgctgaccgtcccc
ggcatcacctacgtgatcgactccggactggcccgcatctcccgctactcccagcgcacc
aaggtccagcgcctgcccatcgagcccatctcccaggccagtgcgaatcagcgttccggt
cgctccggccggaccgcccccggcatcgcgatccggttgttctccgaggaggacttcgag
ggccgcccggagttcaccgaaccggagatcctgcgcaccgcgctcgcctccgtggtgctg
ctgatgacctcgctggggctcggcgacgtggagtccttccccttcgtcgagccgcccgcc
agccgtgcgatcaccgatggcgtgcgcctgctggacgagctcggggcgatcgaggacgcc
ccccgcgaacccggcggtcgccgactcacccgcgtcggccgcaccctcgcccgcttcccg
ctggacccgcggatggcgcgcatgctcatcgaggcccaccgcctgggcgccctgcgcgag
gtgctgatcatcgtcgccgcgatgtcgatccaggacccccgcgagaggccgctcggtcag
gagcagcaggccaaggagaagcacaagcgcttcgaggacgagaccagcgacttcctcgct
tacctgaacctgtggaaccacctccagtcccgacgcaaggcgctgtccaattcagccttc
cgccgcgaggtgcgctctgagcacctccactacctgcggatccgggaatggtgggacctg
cactcgcagctgcgggacatggccaaggacgtggacctctccctgggcgacaccgacgcc
tccccacaggcgatccaccaggcgctgctggccgggctgctctcccatgtcggcctccag
gacgaccgcagccgggagtatgccggggcccgcggcgcccgctttgccctatggccgggc
tcggcgctggcgaagaagcgccccgattacgtgatggtcgccgaactggtggagacctcc
cggctgtggggccgcaccgccgcccggatcgatccgacctgggcggaggaggccggctcc
cacgtcgtcaaacgctcccactccgccccgcactggtcctcgaagcaggcctccgcgatg
gcgcatcagaaggtctccctgtacggggtgccgatcgtcgccgaccgcgtcgtcggctac
gggcgcatcgaccccgaggccgctcgagagatcttcatccagcacgccctgatcgagggg
gactggcgcacccgtcaccacttcttccgcgacaaccaggcgctgatcaaggagctcgag
gagctcgaggccaagacccgtcgccgtgacctgctgatctcggacgagcagctgttccgt
ttctacgacgaacggatccccgtctccgtcgtctccggccgccatttcgacacctggtgg
aagacgcagcgccacgagaccccggagctgctcaccctcaccgagcaggatctgctggcc
gccgaggagggagtcgccgagacgatcgccgccgagttcccggatacctgggtgcagggg
gacatcaccttgccgctgagctattccttcggcgcggtgggggcgaagggcaccgacggg
gtcaccgccacggtcccgctcgcggtgctcaaccgactgcagccgcgcggcttcgactgg
ctcgtccccggcatgcgcgaggagctggtcaccgagctgatccgctccctgcccaagccc
atccgccgccatctggtgcctgccccggagcgggccaaggcggtggccgcgacgctgcat
gacgatgaccccgacgccggggaggtcttcctcgaagcggtcgccgacgagctggtcgcc
ctgccgggcgtgccggaggacctgccgctgtacggtcccgagttcgacaccgcgaagctg
cccgcgcacctgcggatgcatttccgggtggtcgatgacaaggggcgggagatcggcggg
ggtgatgacctggagcagctcaaggcccggctgaagaagcgggtggacgcctcggtctcc
acccgcgctgattccctcgcccgcaccgacctgcccgggttccccgcgcagggggtgccg
gcggtgcacgagtccaccgtcggggggctgaaggtcaccggctatccggccctggtcgcg
cgccgcggcgaggacggccggcttcagcaggtggacctggcggtgctcgcaaccgccgac
gagcaggcgctcgcgcaccgcgagggcgtcatctccctgctggaccgggatctcggcgcc
gatctgggcacggtgctgaacgccctgccgaaccccacgaagctcgccgtcgcaggctcg
gactacgcctccaccgcagcgctgctcgcggacgcctcgcgggcggcgaccgtgcacctg
gccggcaccgccgaggtgcgcaccgcggcggagtacgaggcattgctggagcaggtgcgc
agcgggcacgacgccctcgccgcccaagcggtgaaggatgctgcggcggcgctcgccacc
tccgcgaaactccacaaggagctctcccggtcaccgtcgctctcggtgctgtcccatctc
acgcagatccgtgagcacgcggcctccctgctgggggacgggttcatctcccgcaccggc
atcacccacctcccggacctgcgccgctatctcgaggccgacgcgatccgcctggacaag
cttcccgccaacccgcgccgcgacgaacagctcgcctggcagatcggggacctcacccag
cactgggccacgcagcgggcgaagctctccgcccggcgccgggccgagccggacgtgcgc
gagatcgactggctcctggaagagttccgggtgagcctgttcgcccagaccctgggcacc
aggcagacggtctcggacaagcgcatccgctcggcgatcgccgcgctcgcttag
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