Brachybacterium avium: CFK39_14635
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Entry
CFK39_14635 CDS
T04950
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
brv
Brachybacterium avium
Pathway
brv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
brv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CFK39_14635 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brv03400
]
CFK39_14635 (mfd)
Enzymes [BR:
brv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFK39_14635 (mfd)
DNA repair and recombination proteins [BR:
brv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CFK39_14635 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_19
AAA_30
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
ASK66842
UniProt:
A0A220UG23
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All DBs
Position
3262373..3265984
Genome browser
AA seq
1203 aa
AA seq
DB search
MTTQTIAPTLTAEQPPLRPLLDQLGAGSDLTAVRSLVEEGTESGDGGSIVAATGLFPFLV
ADLARRATAEEPLVIVTATTRAAEDLRAALSALVGTAHLVELPAWETLPHERLSPRADTV
AKRLSTLRRIAHPETEDPAHVVLMPVRSLLQPIAKGLGDLRPVRAAVGDTYPLEDIERDL
VDAAYVRVDMVEKRGEFAVRGGILDVFPPTEPHPLRVDLFGDEIDDVRYFSVADQRSLDP
APRGLDAPPCREILLTPAVRERARARAEELPGVRDLLLRIADGIAADGMESLSPVLVGEM
EQVADALPSGARFLVLDPEKARARADELVATTEEFLAAAWSSAAAGGGLPIDVGAASFVP
LSEAKGHAREGGRPWFTLAAFGLDTDVDLTTASSTHPGYSGKPGDAAKDLEQRRAEGWSV
ISTMVGPGGARHVAENLRSEGLPAVFTAELTGPVAPGEAVVTVGPFVEGLVDTDLKLILA
AERDLTGKSGARRAEERKMPSRRRNVVDPLQLRPGDHVVHAHHGVGRFVEMTSRAVGVGA
KRTTREYLVIEYAPSKKGQPGDRLYVPSDQLDQVTKYVGGEEPSVNRMGGADWAKTKSKA
RKAIREIADELVRLYSARQSAPGHAFGPDTPWQRELEDSFEFVETPDQLSSIEAVKADME
KSVPMDRLILGDVGYGKTEIAVRAAFKAVQEGKQVAVLAPTTLLAQQHLDTFAERYTGFP
VTVRGLSRFQNPADSTATVEGLADGSVDVVIGTHRLLTGNVRFKDLGLLIIDEEQRFGVE
HKETLKALRTNVDVLSMSATPIPRTLEMAVTGIRELSILATPPEERHPVLTYVGAQEDKQ
ITAAIRRELLREGQVFYIHNRVEDIDRVAAHLRELVPDARIQVAHGKMNEHQLERVIIDF
WERDFDVLVCTTIVETGLDIANANTLIVENADRFGLSQLHQLRGRVGRSSERAYAYFLYN
ATKPLTELAHDRLTTLATNTDLGAGMQVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVR
MVGEAVAAFRGESTAPEKEIRVELPLDAHVPHEYIGSERLRLEAYSKLSAVREVSEVEQI
RSELTDRYGAPPAPVEVLLDVARFRIDARAAGVDEIQAQGKMIRFAHLEVPDSAAMRMKR
LYPGTVLKPAVRQVLVPRPMTSRFGGTELRDHDLLEWTREVLRTLVPAAAEQITAPTVRT
TAK
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgcagaccattgccccgaccctgaccgccgagcagccgccgctgcgtccgctg
ctggaccagctgggcgccggcagcgatctcaccgcggtccgctccctggtcgaggagggc
accgagagcggtgacggcggcagcatcgtcgccgccaccggcctgttccccttcctggtg
gcggatctcgcccgccgggccacggccgaggagccgctggtgatcgtcaccgcgaccacc
cgtgccgccgaggatctgcgagcggcgctgtcggccctggtcggcaccgcgcacctggtc
gagctgcccgcctgggagaccctgccccacgagcggctctccccgcgagccgacaccgtc
gccaagcggctgtcgaccctgcgacgcatcgcgcaccccgagaccgaggacccggcgcac
gtggtgctgatgcccgtgcgctccctgctgcagccgatcgcgaagggcctgggggacctg
cgcccggtgcgcgcggcggtgggggacacctacccgctggaggacatcgagcgggacctc
gtcgacgccgcctacgtgcgggtggacatggtcgagaagcggggtgagttcgccgtgcgc
ggcggcatcctcgacgtcttcccgcccaccgaaccgcatccgctgcgcgtggacctcttc
ggcgacgagatcgacgacgtccgctacttctccgtcgccgatcagcgctccctggacccg
gccccgcgcggcctcgacgccccgccctgccgcgagatcctgctgaccccggccgtgcgg
gagcgtgcccgggcccgcgccgaggagctgcccggagtgcgggacctgctgctgcggatc
gccgacggcatcgccgccgacggcatggaatccctcagcccggtgctggtcggcgagatg
gagcaggtggccgacgcattgccctccggggcccgcttcctggtcctggatcccgagaag
gcccgtgcccgggccgacgagctggtcgccaccaccgaggagttcctcgccgcggcctgg
tccagcgccgccgccggcggcggactgccgatcgatgtgggtgcggcgagcttcgtcccg
ctgtccgaggcgaagggacatgcccgcgagggcgggcgcccctggttcacgctggccgcc
ttcggcctggacaccgacgtcgacctcaccaccgcctcctccacgcatcccggctattcc
ggcaagcccggcgacgccgcgaaagacctcgagcagcgccgcgccgagggctggtccgtg
atctcgaccatggtcggccccgggggagcgcgccacgtcgcagagaacctgcgctccgag
ggactgcccgcggtcttcaccgccgagctcaccggccctgtcgcgccgggcgaggccgtg
gtcaccgtcgggcccttcgtcgagggtctggtcgacaccgacctcaagctgatcctcgcc
gccgagcgggacctcaccggcaagtccggggcgcgccgcgccgaggagcggaagatgccc
tcgcggcgccgcaacgtcgtcgatccccttcagctgcgccccggggaccatgtcgtccac
gcccaccacggtgtcggccgtttcgtggagatgaccagccgcgccgtcggcgtcggcgcc
aaacgcaccacccgtgagtacctggtcatcgagtacgcgccctcgaagaagggacagccc
ggggaccgtctctacgtccccagcgaccagctcgaccaggtcaccaagtacgtcggcggc
gaggagccgagcgtcaaccgcatgggcggtgccgactgggcgaagacgaagtccaaggcg
cgcaaggcgatccgcgagatcgccgacgagctggtgcggctgtactccgcccggcagtcc
gcgcccgggcacgccttcggccccgacaccccgtggcagcgagagctcgaggactccttc
gagttcgtcgagacccccgaccagctctccagcatcgaggccgtcaaggcggatatggag
aagtccgtccccatggatcggctgatcctgggggatgtcggctatggcaagacggagatc
gcggtacgcgccgcgttcaaggccgtccaggaggggaagcaggtcgccgtgctcgcccca
acgaccctgctcgcccagcagcacctggacaccttcgccgagcgctacacgggtttcccc
gtcaccgtgcgcgggctctcccgcttccagaaccccgccgactccacagccactgtcgag
gggctggccgacggcagcgtcgacgtggtgatcggcacccatcgcctgctcaccggcaat
gtgcgcttcaaggacctgggactgctgatcatcgatgaggagcagcgcttcggcgtcgag
cacaaggagacgctcaaagcgctgcgcacgaacgtggacgtgctgtcgatgtccgcgacc
ccgatcccgcgcaccctcgagatggcggtcaccggcatccgcgagctgtcgatcctggcg
accccgccggaggagcggcacccggtcctcacctacgtcggtgcccaggaggacaagcag
atcaccgcggccatccgtcgcgagctgctgcgcgaggggcaggtcttctacatccacaac
cgagtcgaggacatcgaccgggtcgccgcgcacctgcgtgagctggtgcccgatgcacgg
atccaggtcgcccacggcaagatgaacgagcatcagctggagcgggtgatcatcgacttc
tgggagcgagatttcgacgtgctggtgtgcaccaccatcgtcgagaccggtctggacatc
gccaacgcgaacacgctgatcgtggagaatgctgaccggttcggtctctcccagctgcat
cagctgcgcggtcgcgtggggcgttcgagcgaacgggcctacgcctacttcctctacaac
gcgacgaagccgctcaccgagctcgcgcacgaccgtctcaccactctcgccaccaacacc
gacctcggagcaggcatgcaggtggcgatgaaggacctcgagatccgcggcgcgggcaac
ctgctgggcggcgagcagtccggccacatcgccggcgtcggcttcgacctgtacgtgcgg
atggtgggagaggccgtggcggccttccgcggcgagagcaccgcgcccgagaaggagatc
cgcgtcgagctgccgctggacgcccacgtcccgcacgaatacatcggctccgagcggctg
cgcctggaggcgtactcgaagctctccgccgtgcgggaggtctccgaggtcgagcagatc
cgctcggagctcaccgaccgctacggcgcaccgcccgcgccggtcgaggtgctgctggac
gtggcccggttccggatcgacgcccgcgccgcgggggtcgacgagatccaggcccagggc
aagatgatccgcttcgcgcacctggaggtgccggattccgcggcgatgcggatgaagcgc
ctctacccgggcaccgtgctcaagcccgccgtgcgccaggtgctggtgccgcgcccgatg
acctcccgattcgggggcaccgagctgcgggaccatgacctgctggagtggacgcgggag
gtgctgcgcaccctcgtccccgctgcggcggagcagatcaccgcacccacggtgcgcacc
acggcgaagtag
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