Brachybacterium sp. P6-10-X1: BH708_06230
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Entry
BH708_06230 CDS
T04713
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
brx
Brachybacterium sp. P6-10-X1
Brite
KEGG Orthology (KO) [BR:
brx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brx03019
]
BH708_06230
Enzymes [BR:
brx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BH708_06230
Messenger RNA biogenesis [BR:
brx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BH708_06230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
HA2_N
nSTAND3
FtsK_SpoIIIE
ABC_tran
AAA_23
TrwB_AAD_bind
AAA_30
SLFN-g3_helicase
PhoH
Motif
Other DBs
NCBI-ProteinID:
APX32386
UniProt:
A0A1P8NDJ5
LinkDB
All DBs
Position
complement(1365834..1369703)
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AA seq
1289 aa
AA seq
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MTTPSPSPDLRLSYPAELPVSGRREDIMDAIAQNQVTVIAGATGSGKTTQIPKMLLEMGY
GTDGRLIGHTQPRRIAARSVAQRITSELGQTLGEGAVGFQVRFTKQTARGTRLKLMTDGI
LLAEIGRDRLLKRYDAIIIDEAHERSLNIDVILGYLRQILPRRPDLKIIITSATIDPERF
AEHFGSRRPSGELDPAPIIEVSGRTYPVDILYRPLVLEADLDEDDELEDIHSTERDLTQA
VIDAVDELAAEGPGDMLVFLPGEREIREISEAVTAHLDRGTRGRAALPVEVLPLFGRLSA
QDQQKIFSPPPAGTYRRIILSTNVAETSLTVPGITYVIDSGLARISRYSQRTKVQRLPIE
PISQASANQRSGRSGRTAPGIAIRLYSEEDFAARDEFTEPEILRTSLASVVLLMTSLGLG
DVEYFPFVEPPATRAITDGVRLLDELGAIEDAPREPGGRRLTRVGRTLARFPLDPRMARM
LIEAHRLGALREVLIIVAALSIQDPRERPLGQEQQAKEKHKRFEDETSDFLAFLNLWNHL
QDRRKALSNSAFRREVRSEHLHYLRIREWWDLHAQLRDMARDADLSRNENDASPQAIHQA
LLAGLLSHVGLVDDRTREYTGARGARFMLWPGSALAKKRPDYVMVAELVETSRLWGRTAA
RIDPSWAEETGSHVVKRSYSQPHWSSKRASAMAHEKVSLYGVPIIADRVVGYGRVDPVAA
RDIFLQHALIEGDWRTRHHFFRDNRALIAELEELEAKARRRDLLISDEQLFRFYDERVPK
DVVSGAHFDSWWKTQRHESPDLLTLTEQDLLAADEDAREAILADFPDTWVQGDITLPLSY
SFGDVGGRGPDGVTATIPLDVLNRVRTRGLDWLVPGMREELITELIRSLPKVIRRHLVPA
PERAKAVAARLHDDDPDAGEPFLEAVADELVALPGVPDDLELYGPEFDLSKLPGHLRMHF
RVVDTRGKQIGAGDDLETLRGRLKQRVDASVSSRGDDVARCDLATFPEAGVPNVHESTVG
GLKVTGYPALVARRAEDGQLQRVDLAVLSTADEQALAHRDGVIALLDRELGTDLPAVLNA
LPNPTKLAVAGSDYASTAALLADASRAATIHLVGDARVRTRAEYDALLARVRDEHDALAA
RAVKDAASALAVGARLHKELARVPSLSVLSHLTRIREHAAALLGDGFISRTGLEHLPDLS
RYLEADRVRLEKLPENPRRDEQLAWQIADLEQYWAGVRARLSAPRRTERDVQEIDWLLQE
LRVSLFAQTLGTKQTVSDKRIRKAISALS
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgccctccccgagccccgacctgcgcctgtcctatcccgccgagctgcccgtc
tccggacgccgcgaggacatcatggacgcgatcgcgcagaaccaggtgaccgtgatcgcc
ggtgccacgggctccggcaagaccacccagatcccgaagatgctgctcgagatgggctac
gggaccgacggccggctgatcggtcatacccagccgcggcggatcgccgcccgctcggtc
gcccagcgcatcacgagcgagctcggccagaccctgggggagggagccgtcggcttccag
gtccgcttcaccaagcagaccgcccgcggcacccggctgaagctcatgaccgacggcatc
ctgctcgccgagatcggccgcgaccgcctgctgaagcgctacgacgcgatcatcatcgac
gaggcccacgagcggtcgttgaacatcgacgtgatcctcggctacctgcgccagatcctg
ccccggcgccctgacctgaagatcatcatcacctcggcgacgatcgacccggagcggttc
gccgagcacttcggctcccgccggccctcgggcgagctggaccccgccccgatcatcgag
gtctccggccgcacctatccggtggacatcctctaccgcccgctggtgctcgaggcggac
ctggacgaggacgacgagctcgaggacatccactccaccgagcgcgacctcacccaggcc
gtcatcgatgcggtcgacgagctcgccgccgaggggcccggcgacatgctcgtcttcctg
ccgggcgagcgcgagatccgtgagatctccgaggccgtgaccgcccacctcgaccgcggc
acgaggggcagggcggccctgccggtcgaggtgctgccgctgttcgggcggctgtccgcc
caggaccagcagaagatcttctccccgccgccggcgggcacctaccgtcgcatcatcctg
tccaccaacgtcgccgagacctccctgacggtcccggggatcacctacgtcatcgattcc
gggctggcccgcatctcgcgctactcccagcgcaccaaggtccagcgcctgccgatcgaa
ccgatctcgcaggccagcgcgaaccagcgctccggccgctcgggacgcaccgcccccggc
atcgcgatccgcctgtactccgaggaggacttcgcggcgcgcgacgagttcaccgagccg
gagatcctgcgcacctcgctcgcctccgtggtgctgctgatgacgtcgctgggcctcggg
gacgtggagtacttccccttcgtggagccaccggccacccgcgccatcaccgacggggtg
cggctgctcgacgagctcggcgcgatcgaggacgccccgcgtgaacccggcggccgtcgc
ctcacccgcgtcggccgcaccctggcccggttcccgctggacccgcggatggcgcggatg
ctcatcgaggcccaccgactcggcgctctgcgcgaggtgctgatcatcgtcgccgcgctg
tcgatccaggacccccgcgagcgaccccttggccaggagcagcaggccaaggagaagcac
aagcgcttcgaggacgagaccagcgacttcctcgccttcctgaacctctggaaccacctc
caggaccgccgcaaggcgctgtcgaactccgcgttccgccgcgaggtgcgctccgagcac
ctccactacctgcggatccgcgaatggtgggacctgcacgcccagctgcgcgacatggcg
agggacgccgacctgtccaggaacgagaacgacgcctccccgcaggcgatccaccaggcg
ctgctggccgggctgctctcccacgtcggcctggtcgatgaccgcacccgcgagtacacg
ggggcccgcggcgcccgcttcatgctgtggccgggatcggccctggccaagaagcgcccc
gactacgtgatggtcgccgagctggtcgagaccagccggctctggggccgcaccgccgcg
cgcatcgacccgtcctgggcggaggagaccggctcccacgtcgtcaaacgctcctactcg
cagccgcactggtcctcgaaacgcgcttctgccatggcccatgagaaggtcagcctctac
ggggtgccgatcatcgccgaccgcgtcgtcggctacggccgcgtcgaccccgtcgccgcc
cgcgacatcttcctccagcacgcgctgatcgagggcgattggcgcacccgccaccacttc
ttccgcgacaaccgcgcgctgatcgccgagctcgaggagctcgaggcgaaggcgcggcgc
cgggacctgttgatctccgacgagcaattgttccgcttctacgacgaacgagtcccgaag
gacgtcgtctccggggcgcacttcgactcctggtggaagacgcagcgccacgagagcccg
gacctgctcacgctcacggagcaggacctgctggccgccgacgaggacgcccgtgaggcg
atcctggccgatttccccgatacctgggtgcaaggggacattacgctgccgctgagctac
tccttcggcgacgtcggggggcgggggcccgacggcgtcaccgccacgatcccgctcgac
gtcctcaaccgggtccggacccgcggactggactggctggtgccggggatgcgcgaggag
ctgatcacggagctgatccgctcgctgcccaaggtgatccgacgccacctggtgcctgct
cccgagagggccaaggccgtcgccgcgcggttgcacgacgacgaccccgacgccggtgaa
cccttcctcgaggcggtcgccgacgagctggtcgcgctgcccggcgtgcccgacgacctg
gagctgtacggcccggagttcgacctgtcgaagctcccggggcatctgcggatgcacttc
cgcgtggtggacacccggggcaagcagatcggcgcgggcgacgacctcgagacgctccgg
ggacggctgaagcagcgcgtggacgcctccgtctcctcccgcggggacgacgtggcccgc
tgcgacctggccactttccccgaggccggcgtgccgaacgtgcacgagtccaccgtcggc
gggctcaaggtcaccggttatccggcgttggtggctcgccgtgcggaggacgggcagctg
cagcgggtggacctcgcggttctttccacggccgacgaacaggccctcgcccaccgcgac
ggcgtcatcgccctgctggaccgcgagctgggcaccgatctgcccgccgtgctgaatgcg
ctgccgaaccccaccaagctcgccgtcgcgggttccgactacgcctcgaccgcggcgctg
ctggccgatgcctcccgcgccgcgaccatccatctcgtcggcgatgcgcgggtgcgcacc
cgcgccgagtacgacgccctgctggcccgggtccgcgacgagcacgacgctctcgccgcc
cgggccgtcaaggacgccgcgtcggcgctcgccgtcggggcccggctccacaaggagctc
gcccgggtgccctcgctgtcggtgctctcccacctcacgcggatccgcgagcacgccgcc
gctctgctcggggacggcttcatctcccgcacggggctggagcacctgccggatctgtcc
cggtatctcgaggccgatcgggtccggctggagaagctgccggagaatccccggcgcgac
gagcagctggcctggcagatcgccgacctcgagcagtactgggccggcgtgcgcgcacgg
ctgtcggcccctcggcgcaccgagcgggacgtccaggagatcgactggctgctgcaggag
ctgcgtgtgagcctgttcgcccagacgttgggcacgaagcagacggtctcggacaagcgg
atccgcaaggcgatctccgccctgtcctga
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