Bacillus rugosus: M0696_00335
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Entry
M0696_00335 CDS
T08218
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bry
Bacillus rugosus
Pathway
bry03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bry00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M0696_00335 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bry03400
]
M0696_00335 (mfd)
Enzymes [BR:
bry01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M0696_00335 (mfd)
DNA repair and recombination proteins [BR:
bry03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M0696_00335 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
Zot
AAA_14
Motif
Other DBs
NCBI-ProteinID:
UPV79280
LinkDB
All DBs
Position
60035..63568
Genome browser
AA seq
1177 aa
AA seq
DB search
MDNIQTFIKESDDFKSIINGLHEGLKEQLLAGLSGSARSVFTSALANETNKPIFLITHNL
YQAQKVTDDLTSLLEDRSVLLYPVNELISSEIAVASPELRAQRLDVINRLTSGEAPIVVA
PVAALRRMLPPVEVWKNSQMLIQVGHDIEPDQLASRLVEVGYERSDMVSAPGEFSIRGGI
IDIYPLTSEHPVRVELFDTEVDSIRSFNSDDQRSIETLTSINIGPAKELIIRPEEKARAM
EKIDKGLAASLKKLKVDKQKEILHANISHDKERLSEGQTDQELVKYLSYFYEKPASLLDY
TPENTLLILDEVSRIHEMEEQLQKEEAEFITNLLEEGKILHDISLSFSFQKIVAEQKRPL
LYYSLFLRHVHHTSPQNIVNVSSRQMQSFHGQMNVLAGEMERFKKSNFTVVFLGANKERT
QRLSSVLADYEIEAAMTDSKKALVQGQVYIMEGELQSGFELPLMKLAVITEEELFKNRVK
KKPRKQKLTNAERIKSYSELQIGDYVVHINHGIGKYLGIETLEINGIHKDYLNIHYQGSD
KLYVPVEQIDQVQKYVGSEGKEPKLYKLGGSEWKRVKKKVETSVQDIADDLIKLYAEREA
SKGYAFSPDHEMQREFESAFPYQETEDQLRSIHEIKKDMERERPMDRLLCGDVGYGKTEV
AIRAAFKAIGDGKQVALLVPTTILAQQHYETITERFQDYPINIGLLSRFRTRKEANETIK
GLKNGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYN
RVEDIERKADEISMLVPDAKVAYAHGKMTENELETVMLNFLEGESDVLVSTTIIETGVDI
PNVNTLIVFDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFT
ELGSGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKTVQFE
TEIDVELDAYIPETYIQDGKQKIDMYKRFRSVATIEEKNELQDEMIDRFGNYPKEVEYLF
TVAEMKVYAKHERVELIKQDKDAVRLTISEEASAEIDGQKLFELGNKYGRQIGLGMEGKK
LKISVQTKGRSADEWLETVLGMLKGLKNVKKQTISST
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggacaacattcaaacctttataaaagaaagcgatgactttaaatccatcatcaacggt
ttacacgaggggctgaaggaacagctgctcgcgggtctgtcgggttccgcgcgttctgtt
tttacttctgccctggctaatgaaacgaataagcctatctttctaatcacccataattta
tatcaagcccagaaagtaacggatgatctgacttcacttctagaggatcggtctgtcctt
ttgtaccccgtcaatgaactcatttcatcagaaatcgcagtcgcaagccctgaattgcgg
gcgcagcgattagatgtcattaatagattaacgagtggagaagcgccaattgtcgttgct
cctgtagctgcactcagaagaatgctgccgcctgtagaggtctggaaaaacagccaaatg
ctcattcaagtgggccatgacatcgaacctgaccagcttgcatcacgtctggtagaggta
ggatatgagcgttctgatatggtttctgcacccggggaattcagtattcgcggaggaatc
attgatatttacccgctgacgtcagagcacccagttagagttgaactttttgacactgaa
gtggattcaatccgcagctttaactcagatgatcagcggtcaattgagactcttacctcg
atcaatatcggtcctgcaaaggaattgattatcagacctgaagaaaaagcgcgggcgatg
gagaaaatcgataaaggccttgccgcaagcctgaaaaaattaaaggtcgacaagcaaaaa
gaaattcttcatgcgaatatttctcacgataaagaacgcttgtcagaaggccagacagat
caggagctggtgaagtatctctcatatttctatgaaaagcctgctagtttactagattat
actcctgagaatacacttctgattttggatgaagtcagccggatccatgagatggaagag
cagcttcaaaaagaagaagcggagttcataacaaaccttcttgaggaagggaagattttg
catgacatcagtttgtcattcagcttccaaaaaatagtggctgagcaaaaacggcctctg
ctgtactattctttatttttacggcatgtacaccatacgagtccgcaaaatatcgtcaat
gtatcaagcagacaaatgcagagtttccatggccaaatgaacgtgcttgctggtgaaatg
gaacgttttaaaaaatccaacttcaccgttgtgttcttaggagcaaacaaggaacgtaca
cagagattatcttcagttctggctgattatgaaatcgaagcggccatgacagatagcaaa
aaggcgcttgttcagggacaggtctatattatggaaggcgagctccaatcgggatttgag
ctgccgttaatgaagcttgcggttattacggaagaagaactgtttaaaaaccgtgtaaaa
aagaagcctcgaaaacagaagcttactaatgcagagcgcatcaaaagctattccgagctt
caaatcggtgattatgtcgttcatattaatcacgggatcggaaagtacttagggattgaa
acccttgaaattaatggtatccataaagactatttaaatattcattaccagggaagcgac
aagctttacgtccctgtagaacaaattgatcaggttcaaaaatatgtcggctccgaagga
aaagagccgaagctgtacaaattaggcggaagcgaatggaagcgggtcaagaaaaaagta
gaaacatccgttcaggatattgctgatgatttaattaagctgtatgccgaaagggaagca
agcaagggctatgcgttttctcctgaccatgagatgcagcgtgaattcgaatcagcgttc
ccttatcaagagactgaggatcagcttcgttccattcacgaaatcaaaaaggacatggaa
agagaacgtccgatggaccgcttgctatgcggagatgtcggctacggtaaaacagaggtt
gccatacgtgccgcgtttaaggcgataggtgatggaaagcaggtagccctgctcgttccg
acaactattttggcacagcagcactatgaaaccattaccgagcgcttccaagactatccg
attaatatcggccttctcagcagattcagaacgagaaaagaagcgaacgaaacgatcaaa
ggattgaaaaatggcactgttgatatcgttatcgggacgcaccggctgttatcaaaagat
gtcgtttataaagacttagggctcctcattattgatgaagagcagcgcttcggtgtaacc
cataaagaaaagatcaagcaaattaaagccaatgttgatgtattaacattaacagcgaca
ccgattccgcgtacgctgcatatgtctatgcttggcgtaagggatctttcagtcatagag
actccgccggaaaaccgctttcccgtacagacgtatgttgtggaatacaacggcgccctt
gtcagagaggcgattgaacgcgagcttgcacgcggaggacaggtctatttcttgtacaac
cgggtagaggatatcgagcggaaagcggatgagatctcaatgcttgtccctgacgctaag
gtagcgtatgcacatgggaaaatgacagaaaatgaattagaaaccgttatgctgaatttc
cttgaaggagaatcagacgttctcgtcagcacaaccattattgaaacaggcgtagacatc
ccgaacgtcaatacgctgattgtatttgacgccgacaagatgggtctttctcagctttat
cagctgcgggggcgtgtcggccgttctaatcgggtggcgtatgcgtacttcacgtaccgc
cgggataaagtgctgacagaagtggctgaaaaaaggctgcaggctattaaagagttcaca
gagctcggttccggttttaaaatcgcaatgcgtgacttaacgattcgcggagccgggaat
cttcttggcgcccagcagcacggcttcatcgattcggtcggatttgacctctattcacaa
atgctgaaggaggccattgaagagcgtaaaggagatacagcgaagacagtgcagtttgaa
acagaaattgatgtcgagcttgacgcgtatattcctgaaacctatattcaagacggcaaa
cagaaaattgatatgtataaacgcttcaggtctgtggctacaatcgaagagaagaatgaa
cttcaagacgaaatgatcgaccggtttggaaactatccaaaagaagtcgaatacttgttt
actgttgcagaaatgaaggtttatgcgaaacatgaacgtgttgaactgattaagcaggat
aaagatgcggtcagattgacgatttctgaagaagcaagtgcagaaattgacggccagaag
ctgtttgagcttggcaataaatatggcagacaaatcggactgggaatggaaggaaaaaaa
ctcaaaatctccgtacagacaaaaggccgcagtgccgatgaatggctcgaaacggtgctg
ggcatgctgaagggtttaaaaaatgtgaaaaagcaaaccatttcatcaacgtaa
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integrated database retrieval system
