Brachybacterium vulturis: CFK38_00890
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Entry
CFK38_00890 CDS
T05108
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
brz
Brachybacterium vulturis
Brite
KEGG Orthology (KO) [BR:
brz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brz03019
]
CFK38_00890 (hrpB)
Enzymes [BR:
brz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CFK38_00890 (hrpB)
Messenger RNA biogenesis [BR:
brz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CFK38_00890 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_22
CON_HrpB
AAA_25
AAA_19
AAA_11
Cas3-like_C_2
HA2_N
nSTAND3
ParA
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
ATG50235
UniProt:
A0A291GJ64
LinkDB
All DBs
Position
201867..204488
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AA seq
873 aa
AA seq
DB search
MPAPQSTPRSAPHRFDLDVIGAGLPVGAARTELEAAARRGALVVTAPPGTGKTTLVPPLV
ANLADGLTLVTQPRRVAVRAAARRLAQLDRTPLGGPVGFTVRGQREVGTATRLEMLTPGV
LLRRLLADPELPGVAAVVLDEVHERSLETDLLLGMLAEARQLREDLLVGAMSATLDAAAV
AAVLDGAAIVEVPSALHPLSIDHAPSTAPRLDVRGITREYLDHLARTAARAQRAQGSDAL
VFLPGAREVDAVVSRLQELVGDEVEVLALHGRLPAAQQDRATGGRRPGERPRIVVSTALA
ESSLTVPGVHLVVDAGLSRQVRRDRARDMSGLVTVSASRAAAEQRAGRAARQGPGQAVRV
FSEAELAGMPAQSPPEITATDLTDAALWLACWGTPRGDGLPLLTPPPRAEIIAAEQTLQA
LGLVDEEGRPTPSGTRVARLPVGVREARALLDGARRLPGREAARTAAEVVAAVSDDHRPA
GADLPRLLQDLRSGRAPGAERWRRERDRLTRIARSAPVTSQAGPARPRPPAAPEAPDAAH
EAGIVLALARPERIARRTEAGSRSYLLASGTRAALPEGSALASAPWLVVWEVQRAAGRAA
DGTGAVIRAAAPLTEQDALLLGAGLLLEERTALLENGTVRARQRRALGAIELSSTPVAAT
ARDTVPAVLAAVRARGLDALPDDPGAAALRARLALIHRELGDPWPAMDEASLLADLETWL
APQLSARTTKLSAIDLKGGLRHLLPWPEASELAGLAPERLAVPSGGTARIDYPAPDAEDG
RPVVSVKLQEVFGLAETPRLVRGRVPVLFHLLSPARRPLAVTDDLRSFWDGPYQEVRKEM
RGRYPKHPWPEDPWTAPATARTTRGARHSTRRG
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgcccgctccgcagtccactccgcgctccgccccgcatcgcttcgacctcgacgtcatc
ggtgccgggctgcccgtcggggcggcccggaccgagctggaggctgccgcgcgccgcggc
gcactggtggtcacggcgccgcccggcaccggcaagaccaccctggtgccgccgctggtg
gcgaacctcgccgacggcctcaccctggtcacccagccgcgccgggtcgcggtccgtgcc
gccgcccgtcgcctcgcccagctggatcggaccccgctcggcggaccggtcggcttcacc
gtgcgcgggcagcgggaggtcggcaccgcaacccggctggagatgctcaccccgggcgtc
ctgctgcgccgcctgctcgccgatccggagctgcccggggtcgccgcggtggtgctggac
gaggtccacgaacggtccctggagacggacctgctgctggggatgctcgccgaggcccgg
cagctgcgcgaggatctgctggtcggagcgatgtcggcgacgctcgatgcggcggccgtg
gcggccgtgctggacggcgccgcgatcgtggaggtccccagcgccctgcacccgctgagc
atcgaccacgccccctccaccgccccccgcctcgacgtccgcggcatcacccgcgagtat
ctcgaccacctggcccgcaccgccgcccgggcgcagcgcgcgcagggcagcgatgccctg
gtcttcctgcccggcgcccgtgaggtcgacgcggtggtctcgcgcctgcaggagctggtc
ggcgacgaggtggaggtgctcgccctgcacggcaggctgcccgccgcgcagcaggaccgt
gccaccggcggccggcgccccggcgagagaccccggatcgtggtctccaccgcgctcgcg
gagagctccctcaccgtgcccggggtgcacctggtcgtcgacgcggggctctcccgtcag
gtgcgccgggaccgggcccgggacatgtcgggcctggtcaccgtcagcgcctcccgggcc
gcggccgagcagcgggccggtcgcgccgcccgccaggggcccggccaggcggtgcgggtg
ttctcggaggcggagctggcagggatgcccgcgcagtccccgccggagatcaccgccacc
gacctcaccgacgccgccctgtggctggcctgctggggcaccccgcgcggggacgggctg
ccgctgctcaccccgccgccgcgcgccgagatcatcgccgccgagcagaccctgcaggcc
ctgggtctggtggacgaggagggccggcccactccgtcgggcacccgcgtggcccgcctg
ccggtgggggtccgggaggctcgcgccctgctcgacggagcacgacggctgccgggccgg
gaggcggcgcgcacggccgccgaggtggtcgcggcggtctcggacgatcaccggccggcc
ggggcggatctcccccgcctgctgcaggacctgcgctcgggccgcgccccgggggcggag
cggtggcggcgcgaacgggaccggctcacccgcatcgcccggagcgcgcccgtcacctcc
caggcgggacctgcccgcccgcggccgccggcagcaccggaggcaccggatgccgcgcac
gaggcgggcatcgtgctcgccctcgcccgccccgagcggatcgcccgccgcaccgaagcc
gggtcccgctcctacctgctcgcctccggcacccgcgccgcgctgcccgagggcagtgcg
ctggcgtccgccccctggctggtggtgtgggaggtgcaacgggccgcagggcgtgcggcc
gacggcaccggggcggtgatccgcgccgccgccccgctgaccgagcaggacgccctgctc
ctcggtgccgggctgctgctcgaggagcgcaccgctctcctggagaacggcacggtgcgc
gcccggcagcggcgtgccctcggcgcgatcgagctgtcctcgacgccggtggccgcgacc
gcccgcgacaccgtgccggccgtgctggccgcggtgcgggcccgagggctcgacgcactg
cccgacgatcccggggccgcggcgctgcgggcccggctcgcgctgatccaccgtgagctc
ggcgacccctggcccgccatggacgaggcctcgctgctcgcggacctcgagacctggctg
gccccgcagctgtcggcccgcaccacgaagctctccgcaatcgacctgaagggcggtctg
cgtcacctgctgccctggccggaggcgtccgagctggcgggactggccccggagcggctc
gccgtgccctcgggcggcaccgcccgcatcgactaccccgcacccgacgcggaggacggc
cgtccggtggtctcggtgaagctgcaggaggtgttcggcctcgccgagaccccccgcctg
gtgcgcggccgggtgccggtgctgttccatctgctctcgccggcccgtcggccgctcgcc
gtcaccgatgacctgcgctccttctgggacggcccctaccaggaggtgcgcaaggagatg
cgcggccggtacccgaagcatccctggccggaggatccgtggaccgctccggccaccgcc
cgcaccacgcggggagctcggcacagcacgcggcgcgggtga
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