Brachybacterium vulturis: CFK38_03960
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Entry
CFK38_03960 CDS
T05108
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
brz
Brachybacterium vulturis
Pathway
brz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFK38_03960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brz03019
]
CFK38_03960
Messenger RNA biogenesis [BR:
brz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CFK38_03960
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RNase_J_C
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF459
Motif
Other DBs
NCBI-ProteinID:
ATG50770
UniProt:
A0A291GL25
LinkDB
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Position
884062..885747
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AA seq
561 aa
AA seq
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MPSPRTKLTAPPRLAKNGLRITALGGLGEVGRNMTVFEHAGKLLIVDCGVLFPEEHQPGI
DVILPDFTSIRDRLDDIEAIVLTHGHEDHIGGVPYLLKERADIPVIGSELTLAFITAKLK
EHRITPKTIQVEAGQKHKAGSFDLEFVAVNHSIPDALAIMIRTKAGSVLHTGDFKMDQFP
LDGRITDLRSFARLGEEGVDLFLTDSTNAEVPGFTMSERDLNPAIDQVFTSSPRRIIVSS
FASHVHRIQQVLNAAHANGRKVAFVGRSMVRNMAIARDLGYLNIPKGLVVDFRKIQSMPD
HKITLICTGSQGEPMAALARMSNGDHQIQVGEGDTVLMASSLIPGNENAIYGIINKLTDL
GANIVHKGNAKVHVSGHASAGELVYCYNIVRPKNVMPVHGESKHMHANAELARRTGVPEK
NIVLAQDGVTVDLVAGQAKISGKVEAGLVYVDGQTIGTATEDTLAERRMLSGGGVVTVVA
LIDPKTNQPVEPLEFITKGFVHDDKTFKGAETQVSKALARARQDKIDDIGELEEIIVEAV
GSYLRRTYRREPAVMAVVVDA
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgccctctccccgcaccaagctcaccgcacccccgcgccttgccaagaacggcctgcgc
atcaccgcgctcggcggcctcggcgaggtgggccgcaacatgaccgtgttcgagcacgcc
ggcaagctgctgatcgtcgactgcggcgtgctcttccccgaggagcaccagcccggcatc
gacgtgatcctgccggacttcacctcgatccgggaccgcctggacgacatcgaggcgatc
gtcctcacgcacggtcacgaggaccacatcggaggcgtcccgtacctgctcaaggagcgg
gcggacatccccgtgatcggctccgagctgacgctggcgttcatcaccgcgaagctcaag
gagcaccgcatcacccccaagaccatccaggtcgaggcggggcagaagcacaaggcgggc
tcgttcgacctcgagttcgtcgcggtcaaccactccatccccgatgcgctcgccatcatg
atccgcaccaaggccggctccgtactgcacaccggtgacttcaagatggaccagttcccg
ctggacggccgcatcaccgacctgcgctccttcgcccggctcggcgaggagggcgtggac
ctgttcctcaccgactccacgaacgccgaggtccccggcttcacgatgtccgagcgggat
ctgaacccggcgatcgaccaggtgttcacctcctcgccgcgacggatcatcgtctccagc
ttcgccagccacgtgcaccgcatccagcaggtgctcaatgccgctcacgccaacggccgc
aaggtcgccttcgtgggccgctcgatggtgcgcaacatggcgatcgcccgcgacctcggc
tacctgaacatccccaagggcctcgtcgtcgacttccgcaagatccagtcgatgcccgat
cacaagatcaccctgatctgcaccggttcgcagggcgagccgatggcggcgctggcccgc
atgtccaacggcgaccaccagatccaggtcggcgagggcgacaccgtgctgatggcctcc
tcgctgatccccggcaacgagaacgccatctacgggatcatcaacaagctcaccgacctc
ggcgcgaacatcgtccacaagggcaacgcgaaggtgcacgtctccggtcacgccagcgcc
ggcgagctcgtgtactgctacaacatcgtgcggccgaagaacgtgatgcccgtgcacggc
gagtccaagcacatgcacgccaacgccgagctggcccgccgcaccggggtgccggagaag
aacatcgtcctcgcgcaggacggcgtgaccgtggacctcgtggccggccaggcgaagatc
tccggcaaggtcgaggccggtctggtgtacgtggacggccagaccatcggcaccgccacc
gaggacaccctcgccgagcgccgcatgctctccggcggcggtgtggtcaccgtggtcgcc
ctgatcgatcccaagaccaatcagccggtcgagccgctggagttcatcaccaagggcttc
gtgcacgacgacaagaccttcaagggcgccgagacccaggtgagcaaggccctcgcccgc
gcccgtcaggacaagatcgacgacatcggcgagctcgaggagatcatcgtcgaggccgtc
ggcagctacctgcgccgcacctaccgtcgcgagccggcggtcatggccgtggtcgtcgac
gcgtga
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