Brachybacterium vulturis: CFK38_12560
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Entry
CFK38_12560 CDS
T05108
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
brz
Brachybacterium vulturis
Pathway
brz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFK38_12560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brz03019
]
CFK38_12560
03009 Ribosome biogenesis [BR:
brz03009
]
CFK38_12560
Enzymes [BR:
brz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CFK38_12560
Messenger RNA biogenesis [BR:
brz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CFK38_12560
Ribosome biogenesis [BR:
brz03009
]
Prokaryotic type
rRNA helicases
CFK38_12560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
RepB
Motif
Other DBs
NCBI-ProteinID:
ATG52266
UniProt:
A0A291GQK4
LinkDB
All DBs
Position
2793603..2795555
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AA seq
650 aa
AA seq
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MTDVSPAHDSAASEQPETTAPAEVAAEPGTTRDETAQTAPAPAESAQPEAAQPETAAPVE
PEVPAAPSFDDIALPAPLRRAVDELGFTTPSAIQAQAIPPLLEGRDVIGVAQTGTGKTAA
FGLPLLAAIDPSRREVQALVLAPTRELAMQVADAIASFATSIGGLDVVALYGGSPYGPQE
RALARGAQVVVGTPGRVMDHMRRTNLRLDTVRFAVLDEADEMLRMGFAEDVEEILSHSPA
SRQVALFSATMPSAIQRVAQTHMNDPVRVSVSPQSSTVKSVTQTYAVVPFRHRTGALARV
LQTSPAEAAIVFVRTRAAAEEVGTALLSRGLIAASISGDVPQKEREKIVERLRDGSLQVL
VATDVAARGLDVERIGLVVNFDVPKEAESYVHRIGRTGRAGRSGEALTFIGPHERRALKN
IERATKQTLAEADIPSPRDVSKHRLAAQLTKLPERIERGRLEMYRELIGEFVTEHELDPL
ELAAALGAMSVGDEGPGAPSEEEEFTGAKLSGDARHAERGHRGDAPTTERGYTSYKVGVG
HTHGARPPGIVGAITGEGGLHGKDIGKIQIFPNFALVQIRGALSSEQMERISRAKVGGRE
LRIGPDQGPRGGKGPRRDGDRPFRRHDRPHHDDRGGRFDSKRRPFRRSEG
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgtttcccctgcccacgactccgccgcctccgagcagcccgagaccaccgcg
ccggccgaggtcgccgcggagcccggcaccacccgggacgagaccgcacagacagctccc
gcacccgcggagtccgcgcagccggaggccgcgcagcccgagaccgccgcgccggtcgag
ccggaggtccccgctgcccccagcttcgacgacatcgcgctgccggctcccctgcgccgc
gccgtcgatgagctcggcttcaccaccccctcggccatccaggcccaggccatcccgccg
ctgctggagggccgcgacgtgatcggcgtcgcccagaccggcaccggcaagaccgccgcc
ttcggcctgccgctgctggccgcgatcgatccctcgcgccgtgaggtgcaggccctcgtg
ctcgcgccgacgcgcgagctggcgatgcaggtggccgacgccatcgcctccttcgccacc
tccatcggcgggctcgacgtggtcgccctctacggcgggtcaccgtacggtccgcaggag
cgggccctcgcccgcggtgcccaggtcgtcgtcggcacccccggccgtgtgatggaccac
atgcgccgcacgaacctgcgcctggacaccgtccgcttcgccgtcctggacgaggccgac
gagatgctgcggatgggcttcgcggaggacgtcgaggagatcctctcccactcccccgcc
agccgacaggtggcgctgttctccgccaccatgccctcggccatccagcgggtcgcccag
acccatatgaacgacccggtgcgggtgagcgtgagcccgcagtcctcgaccgtcaagagc
gtgacccagacctacgccgtggtgccgttccggcatcggaccggagccctggcccgggtg
ctgcagacctctccggcggaggccgcgatcgtgttcgtgcgcacccgcgccgccgccgag
gaggtcggcaccgccctgctctcccgaggcctgatcgcagcatcgatcagcggcgatgtg
ccccagaaggagcgggagaagatcgtcgagcgcctgcgcgacggttcgctgcaggtgctg
gtcgccaccgatgtcgcggcccgcggcctggacgtcgagcggatcggtctggtcgtgaac
ttcgacgtgcccaaggaggcggagtcctacgtgcaccgcatcgggcggaccggccgcgcc
gggcgctccggcgaggcgctgaccttcatcggcccccacgagcgtcgggcgctgaagaac
atcgagcgcgccaccaagcagaccctcgccgaggcggacatcccctcgccgcgcgatgtg
tccaagcatcgtctggccgcgcagctgaccaagctgcccgagcgcatcgagcggggccgc
ctggagatgtaccgcgagctgatcggcgagttcgtcaccgagcacgagctggatccgctg
gagctcgccgccgccctgggcgcgatgtccgtgggcgacgagggtcccggagccccctcc
gaggaggaggagttcaccggggcgaagctctccggtgacgcccgtcatgcagagcgcggc
caccgcggcgacgccccgaccaccgagcgcggctatacctcgtacaaggtcggtgtgggt
cacacccacggcgcgcggccgccgggcatcgtcggtgcgatcaccggcgagggcgggctg
cacggcaaggacatcggcaagatccagatcttccccaacttcgccctggtccagatccgc
ggtgcgctgtcctccgagcagatggagcggatctcccgggccaaggtcggcggccgcgag
ctgcggatcggccccgatcagggtccgcgcggcggcaagggtccgcgtcgggacggcgac
cgtccgttccgtcgtcatgaccgtccccaccacgacgaccgcggcggccgcttcgactcg
aagcgtcgccccttccgtcgcagcgagggctga
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