Phocaeicola salanitronis: Bacsa_0011
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Entry
Bacsa_0011 CDS
T01433
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bsa
Phocaeicola salanitronis
Pathway
bsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bacsa_0011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bsa03021
]
Bacsa_0011
03019 Messenger RNA biogenesis [BR:
bsa03019
]
Bacsa_0011
Transcription machinery [BR:
bsa03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Bacsa_0011
Messenger RNA biogenesis [BR:
bsa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Bacsa_0011
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
SAP_new25
AAA
NACHT
AAA_25
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
ADY34627
UniProt:
F0R3U0
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All DBs
Position
complement(11621..13585)
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AA seq
654 aa
AA seq
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MYNIIQLNDKDLSELQQIAKELGLKKTSTLQKEELVYRILDEQAIVGATKKATTGKTNEE
RKEGQPRKRSRISVKKEGDKVYTATKDKAQKLEASTPPLPAPAPLFKTENVIAATGTSEN
QPETVPAPENEEKPKPKRGRKPGSKNKSSVEKEQPQVSNDIENTIPEQTEASPAMPDNAE
LPELNMDEGDDFIAIEDLPSEKIELPTELLGKFEATKMEQPIVPDKDNKSNNNRYQSRQQ
RHNNRQANGRPNQPAQASADTPQATAAAPEAATAKPAEKLYEFDDILKGSGVLEIMPDGY
GFLRSSDYNYLSSPDDIYVSQSQIKLFGLKTGDVVDGTIRPPKEGEKYFPLVKVSKINGL
PPELVRDRVPFDHLTPLFPDEKFKLCKGYDDNLSVRIVDLFAPIGKGQRALIVAQPKTGK
TILMKDIANAIAANHPEVYMIMLLIDERPEEVTDMSRSVNAEVIASTFDEPAERHVKIAG
IVLEKAKRMVECGHDVVIFLDSITRLARAYNTVSPASGKVLSGGVDANALHKPKRFFGAA
RNIEGGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMELQLDRNLSNKRIFPAVNLTASS
TRRDDLLLDKTTLDRMWILRKFLADMNPIEAMNSVKEHLEKTKDNDEFLMSMNS
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtataacattattcaattgaacgacaaagatttgtcagaattgcaacagattgccaaa
gagttgggtctgaaaaaaaccagtaccttacaaaaagaagaactggtatatcgtattcta
gacgaacaagctattgtaggagcgactaaaaaagcaactaccggaaaaacaaatgaagaa
cgtaaagaaggacaaccccgcaaacgttcacgcatcagtgtaaaaaaagaaggcgacaag
gtatataccgccactaaagacaaagcacaaaaactggaagcaagcacccccccattaccc
gcaccggcacctttatttaaaacagaaaatgtgattgccgcaaccgggacgtcagaaaac
caacctgaaacagttcctgctccagaaaatgaagagaaaccgaaaccaaaacgcggaagg
aagccgggaagcaagaacaaaagttcggtagaaaaagaacaaccgcaagtctccaacgat
atagagaacacaatacccgaacagacggaagcttcccctgccatgcctgacaatgctgaa
ctaccagaattgaacatggacgaaggcgatgactttatcgctatcgaagaccttccttct
gaaaaaattgaattgccaaccgaattgctgggcaaatttgaagcgacaaaaatggagcaa
ccgattgttcctgacaaagacaacaaatccaacaacaaccgttatcaatcacgccagcaa
cgtcacaataaccgccaagctaacggacgacccaaccaacccgcacaagcgtctgccgac
accccgcaagcaacagcagcggcaccagaagccgcaacagccaaaccagcagaaaaactt
tacgaatttgatgacattcttaaaggctcgggcgtgttggaaatcatgccggacggatac
ggattcctccgctcttcagactacaattatctttcatctcccgatgacatttatgtttcc
cagtcacaaatcaagttattcggactaaaaaccggagacgtggtagacggaacaatccga
ccgcctaaagaaggcgaaaaatatttcccattggtaaaggtgtcaaagataaacggcctg
ccgcctgaattggtacgcgaccgtgttccgttcgatcatctgacacccctcttccctgac
gagaaattcaaactttgcaaaggatatgacgacaacctctccgtacgcatcgtagacttg
ttcgctcctataggcaagggacagcgtgcattaattgtagcacaacccaaaaccggtaaa
acaatcttgatgaaagacattgccaatgccatagctgccaaccatccggaagtgtacatg
attatgttgcttatcgatgaacgtccggaagaagtaaccgacatgtcacgcagtgtcaac
gcagaagtcatagcctctactttcgatgaaccggcagaacgtcacgtaaagattgcggga
attgtattggaaaaagccaaacgcatggtagaatgcggacacgatgtcgtcatcttcctt
gactccatcacccgtttggcccgtgcatacaacacggtttcacctgcatcgggcaaagta
ttgtcgggtggtgtagacgccaatgcactgcacaagcccaaacgtttcttcggtgccgca
cgtaatatagaaggaggaggttcactgaccattatcgctacagcattgatagataccggc
tcaaaaatggatgaagtaatctttgaagaattcaagggtacaggtaatatggaattgcag
ctcgaccggaacctgagcaacaaacgcatcttccctgcagtaaaccttacggcttccagc
acgcgccgcgacgacctgctgcttgataaaaccacactcgaccgcatgtggattttacgc
aagtttttggcagacatgaatccgatagaagccatgaattcggtaaaagaacatctggaa
aaaacgaaagacaacgatgaattcctgatgagcatgaactcataa
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