Phocaeicola salanitronis: Bacsa_1305
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Entry
Bacsa_1305 CDS
T01433
Name
(GenBank) helicase domain protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bsa
Phocaeicola salanitronis
Pathway
bsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bacsa_1305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsa03019
]
Bacsa_1305
03400 DNA repair and recombination proteins [BR:
bsa03400
]
Bacsa_1305
Enzymes [BR:
bsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Bacsa_1305
Messenger RNA biogenesis [BR:
bsa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Bacsa_1305
DNA repair and recombination proteins [BR:
bsa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Bacsa_1305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WG_beta_rep
ARL2_Bind_BART
DUF2420
Motif
Other DBs
NCBI-ProteinID:
ADY35877
UniProt:
F0R770
LinkDB
All DBs
Position
1443725..1448257
Genome browser
AA seq
1510 aa
AA seq
DB search
MKRIEQFEVNDGRWTIIYQDKSEKVIDSQFIPIQYEYIGESMTLKPLNEFPNEYSPIAWW
NFKYGLCPIRINNKWGFVDSKLSIVIQPIFDFVGYTRSQKCACWRPEEFIHHVEWVHGIC
SVTIGNEQKMINERGQFLSQYEISIRNIKNLTVDNIIKIAQENLSPEINIRPWAYIDSKG
RTLEHGTAVLETEEQCNAYLAAYGNMHYKKLQYTFNHNDNKNNIPYSEFKNGLEIYDWGC
GQGIGTVALIEKLRQLNLVSSIKKVTLEEPSEIARSRAVLHIKLALDNDNIEIVEIPYYL
PSDYGDNNNSIQKIDVKQPVAIHIFSNILDIGSVSLKGVSKLITSSGTKHFVFCIGPANL
NESRINAFTNYFKNEDIHIITDFRETDFGRHPNGKAYGCLIKNFSYTLSNAESVLHKYIY
YAPIQVFAAYCDNINDYRINDAVFEILAPFDMTVHKNILPVFALVSNLISRGCPTFASYK
VQSALNSYDAENRKKAFQAIARIQKTLIEALISNRLNLSVQKWEILIIEDDTDIAKLALD
DFYELYHHLISMTTDYSEKALPAFKLYDSKIANPEDEYDIIIDISIKKYCTQEKEMFSKY
KAKNECYFVVRSSHEIYEDRFFYTTERIKYKPFVERNSRGIYIIDKEQTQHLRYFLNLIF
RKEDFRPGQLPILSRALQLKSVIGLLPTGGGKSLTYQLAAMLQPAITVVVDPLKGLMKDQ
YDGLLHTGIDGISYINSDLSATEKREREQKLTGSQVQIMFLSPERLSIYRFREVLRSMRE
SNAYFAYGVIDEVHCVSEWGHDFRLAYLHLGRNLYNYVLPKEVKSEDNHISLFGLTATAS
FDVLADVERELSGRNSYSLEDDATVRYENTNRLELQYYVANIDATNANNVWDVGNIKEER
LLQVIDDATNKINEIQHDDCIKKIKQHFIERENIIDSNKISEIKNADINVSVENRWYLFR
NTDKAGIVFCPRKSENTNLSVPSARSALKKQGVTFLSTYKGGDDTSCQDDFLNGKTNMMV
ATKAFGMGIDKSNVRLIFHLNFPGSLESFVQEAGRAGRDRKMSLATILYSAKKFDVQNVR
TRLFEKFSADYTINKFFYDSNFLGEDFEIYVMDLLMKQLPVKISNEEFYNIQSPTVANTQ
GIIRFLQSYPKGSVLTYYVYYGISSQQLNSYNSQLRSKNFPIFKTNIPDRRYPYGETLFR
DAVQKAIYRMCVIGLIDDFTEDYGKKEFRITTICRDETDYYDFLKLYYRKYYSEERVAAM
IEDVKKDAQTEGTIMACLKHLTSFVYRSIAEKRARGILDMEQFCNMAITSDKDWKDTNED
LKDFIYYYFNSKYAREGFVTYDSSINKEIPFSLKDDTNHDIHTEDEITSFELVKKYMRVV
DKEIVNSDSQKDNIKHLQGAVRLIRRAAPEMNPVLNFLNIFCILFLEEEENEMLEEELYN
DYKAVMDLYLAAGKRNLLNEYTELLIQHSAIYETDREYIEKIQNAIQLEEHLNSLKEITN
KYLNYDRRKN
NT seq
4533 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaggatagagcaatttgaggtcaatgatggaagatggacaattatttaccaagat
aaatcagaaaaagtaattgattcacaatttattccaattcaatacgaatacattggggaa
tccatgactttaaagcctttaaatgaatttcccaatgaatattccccgatagcatggtgg
aattttaaatatggattatgtccgattagaataaataacaaatggggatttgtcgattca
aaactttcaattgttatacaacctatttttgattttgttggttatactcgtagccaaaaa
tgcgcatgttggcgtcccgaagaattcatacatcacgttgaatgggtacatggaatttgt
agtgtaactataggcaatgagcaaaaaatgataaatgagagaggacaattcctatctcaa
tatgagatcagtataagaaatattaaaaatttaaccgttgataatataatcaaaattgcc
caagaaaacctatcgcctgaaattaatattcgtccatgggcatatatagactcaaaaggc
agaacacttgaacacggaaccgctgttcttgaaactgaagaacaatgtaatgcctattta
gctgcatatggaaatatgcattacaaaaaattacaatacacttttaatcataatgataat
aaaaacaatattccgtattcagaattcaaaaatggattagaaatatatgattggggatgt
ggacaaggcataggcacagttgctcttatcgaaaaattacgccaactaaatttagtttct
tcaataaagaaagttacattagaagagccttctgaaatagcccgttcaagagcagttcta
catataaagttagccttagacaatgataatattgaaattgtagaaataccatattatctt
ccttcagattacggggacaacaacaattctatacaaaaaattgatgttaaacaacctgtt
gccattcacattttttcaaacattcttgatataggaagtgtcagtttgaaaggtgtatca
aaactgataacttcttcaggaacgaaacactttgttttttgtatcggtcctgccaatctt
aatgaaagccgaataaatgcatttacaaattattttaaaaatgaagacatccatattatc
acagattttcgtgaaactgattttggcaggcatccaaacggaaaagcatacggctgtctg
ataaaaaacttttcttacacactttcaaatgcagaaagtgtgcttcataaatatatttat
tatgcacccatccaagtatttgctgcatattgtgataacatcaatgattatagaataaat
gatgccgtatttgaaattcttgcaccatttgatatgaccgtgcataaaaatatcttgcct
gtctttgctttggtcagcaatcttatttcaagaggttgtccgacttttgcaagctacaag
gtacaaagcgccctcaactcttatgatgcagaaaacaggaaaaaggcttttcaagccatt
gccagaatacaaaagactttgatagaagctctcatatcaaaccgacttaatttgtcagtt
caaaaatgggaaatacttataattgaagatgatacagacatcgcaaaacttgcacttgat
gatttttatgaattatatcatcatctgataagtatgacaacagactattcagaaaaggca
cttcctgcatttaaattgtatgacagtaaaatcgcaaatccagaagatgaatatgacata
ataattgacatttcaataaagaaatattgtactcaggaaaaagaaatgttttccaagtat
aaagctaaaaacgaatgttactttgttgtccgttcatctcatgagatatatgaagatagg
ttcttttatacaactgaacgcattaaatataaaccttttgtcgaaaggaacagtcgtggt
atatatataatagacaaagaacagacgcaacatctccgctatttcttgaaccttatattc
agaaaagaagatttcaggcctgggcaattacctattttaagccgagctttgcagctgaaa
agtgttatcggattgttgccaacaggtggaggaaagtcgctgacatatcagctagctgca
atgttacaacctgccataacagttgtagttgacccattaaagggacttatgaaagaccaa
tatgacggattgcttcataccggtattgacggtatttcatacataaacagtgatttatct
gctacagaaaaaagagaacgtgaacaaaaattgactggttcacaagtccaaatcatgttc
ctttctcctgaaagattaagtatatacagatttagagaggttttacggtccatgcgtgag
tcaaatgcttattttgcttatggtgtcatagatgaagtacactgcgtgtctgaatggggg
catgacttccgacttgcatatttacatctcggacgaaatctttataattatgtattgccc
aaagaagttaaaagtgaagataatcatatatctttatttggattgacggcaacagcgtca
tttgatgttttggctgatgttgaacgagagctatctgggcgaaattcatactcgcttgaa
gatgacgcaaccgtaagatatgaaaacaccaaccgtcttgaactacagtattatgttgct
aatatagatgcaacaaacgcaaataacgtatgggatgttggaaacataaaagaagaaaga
ttattacaagttattgatgatgccacaaataaaataaacgaaatacaacatgatgattgc
ataaagaaaataaaacaacatttcattgaaagggaaaatatcatagactcaaacaaaatc
tctgaaataaagaatgcggacataaatgtttccgttgaaaacagatggtatttgtttaga
aatacagacaaagcaggcattgtattttgtccgagaaaatcggagaatacaaatcttagt
gttccatcggcaaggtcagcattgaaaaaacaaggagtaacctttttatcaacatataaa
ggtggtgacgatacatcttgtcaagatgattttcttaatggcaagacaaatatgatggtt
gcaacaaaagcatttggtatgggtattgacaaatcaaatgttagattaattttccattta
aactttccggggtcattggaatcatttgttcaagaagcaggacgcgccggtcgggataga
aaaatgtctcttgcaacaatactttattcagcaaagaagtttgatgtccaaaacgttagg
acacgtttatttgaaaaattctcagcggattatactattaataagttcttttatgatagt
aatttcttaggagaagattttgaaatttacgttatggatttgcttatgaagcagcttcct
gtgaaaattagtaatgaagaattttataacatacaatctcccactgttgccaatacacaa
ggtattatccggtttttacaatcatatcctaaaggttcggttttaacttattatgtgtat
tacggtatttcaagtcaacaacttaactcttataattcacaattaagaagtaaaaatttc
cctatttttaaaacaaacataccagatagaagatatccatatggggaaaccttatttagg
gatgctgtgcagaaagcaatctaccgaatgtgtgtgattggtttaattgatgactttaca
gaagattacggaaaaaaggaattccgtattacaacaatatgccgtgatgaaactgactat
tatgattttctaaaactttattatagaaaatattattcggaagaaagagttgcggctatg
atagaagatgtaaaaaaagatgcacaaactgaaggaacaataatggcctgtttgaagcat
ttgacttcttttgtttatagaagtattgccgagaaaagggcacgcggcattttggacatg
gaacaattttgtaatatggcaatcacttccgataaggactggaaagatactaatgaggat
ttaaaagacttcatttattattatttcaattcaaaatatgctcgtgaaggatttgttaca
tacgattcatcaattaataaagaaatacctttctcattgaaagatgatacaaatcatgat
atacatacggaagacgaaataacaagtttcgaattggtaaagaaatatatgcgagtggtt
gacaaagaaatagtaaacagtgattcgcaaaaagataacataaaacatcttcaaggtgcg
gttcgcttaattagaagagctgcgccggaaatgaatcctgtactcaattttctaaatata
ttttgtattctttttcttgaagaagaagaaaatgaaatgttagaagaagaactttataat
gactataaagccgttatggatttatatttagcagcaggtaaacgtaatctgcttaatgaa
tatacagaacttcttattcaacattcagcaatttatgaaacagatagagagtacatagag
aaaatacaaaatgcgattcaattagaagagcatttgaacagtcttaaagaaataacaaat
aaatatttaaattatgatagacgaaagaattaa
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