Phocaeicola salanitronis: Bacsa_2116
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Entry
Bacsa_2116 CDS
T01433
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bsa
Phocaeicola salanitronis
Pathway
bsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bacsa_2116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsa03019
]
Bacsa_2116
03009 Ribosome biogenesis [BR:
bsa03009
]
Bacsa_2116
Enzymes [BR:
bsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Bacsa_2116
Messenger RNA biogenesis [BR:
bsa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Bacsa_2116
Ribosome biogenesis [BR:
bsa03009
]
Prokaryotic type
rRNA helicases
Bacsa_2116
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DUF4520
Motif
Other DBs
NCBI-ProteinID:
ADY36671
UniProt:
F0R455
LinkDB
All DBs
Position
complement(2436557..2438413)
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AA seq
618 aa
AA seq
DB search
MKTFEELGVAPEIRKAIEEMGYENPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAFGLP
LIQKIDVGNRVPQALILCPTRELCLQIAGDLNDYSKYITDLKIIPVYGGSSIESQIKSLK
KGVHIIVATPGRLIDLIERKVAKLETIRDVVMDEADEMLNMGFTDSINAILEKVPEDRNT
LMFSATMSPEISRIAKTYLRDAKEITIGTKNEGTKNVHHVAYIVHAKDKYLALKRVVDFY
PMIYGIIFCRTRLETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQRHLQLLVATD
VAARGLDVNDLTHVINYGLPDDVESYTHRSGRTGRAGKTGISIAIMNLREKGKMKQIERI
LNKKFSVETLPTGQAICEQQLIKLVDDIEKVKVDEEEIEAFLPGIYRKLEWLSKEDLIKR
VVSMEFNRFLDYYKNAPEIDQPSSNEKGKDKKEKKKGERPERRERSRKAEKGYTRLFINL
GKTDGFFPNQVIELINRNLKKERIEVGRIDLMQNFSFFEVIESQASKVVRALNKTTYNGR
KVVVEVASENEGKSDKGGKKRVKETKKTKSRREEPEYEIARKSKRKDDWKQFFEHENDFA
EPDFGEEAGWAKKKKKRK
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgaagacatttgaagaacttggcgtagctcccgaaatacgcaaagcgattgaagaaatg
gggtatgagaacccgatgcctgtacaagaagaagtgattccttacctgttgggaaacggg
aacgatgtagtggctctggcacagaccggaactggaaagacagctgcatttggcttgccg
ctgatacagaaaattgacgttggcaaccgcgtgccgcaggctttgatactctgcccgacg
cgcgaactttgcttgcagatagcaggtgacctgaatgactattcgaagtatatcaccgac
ttgaagataatacccgtttacggaggttcgtctatcgagagccaaatcaagagcctgaag
aagggcgtgcatatcattgtcgctactccgggacggcttatcgacttgatagaacggaag
gtggcaaaactggaaaccatccgtgacgtagtgatggatgaagccgatgagatgttgaac
atgggctttaccgacagcatcaatgccatcttggaaaaggtgcccgaagaccgcaatacc
ctgatgttctcggctacgatgagcccggaaatctcacgcattgccaagacttacctgcgc
gacgcaaaggaaatcaccatcggtacgaagaacgaaggtacgaagaacgtgcatcacgtg
gcttacatcgtgcatgccaaagataaatacttggcgttgaagcgtgtggttgacttttat
ccgatgatttatggcatcatcttctgccgcacccgtctggaaacgcaggagattgccgac
aagctgatacaggacggctataatgccgactcgttgcacggcgagctgagccaggcgcaa
cgtgacctggtgatgcagaagttccgccagcgtcatctgcaattactggttgctacggac
gtggctgcccgcggactggacgtgaacgacctgacacatgttatcaattatggcttgccc
gatgatgtggaaagctatacccaccgaagcggacgtacgggacgtgccggcaagacgggt
atctctatcgccatcatgaacctgcgcgaaaaaggtaagatgaagcagatagaacgcatc
ctgaacaagaagttcagtgttgagaccttgcctacgggacaagccatctgcgaacagcag
ctgattaagctggtagacgatatcgaaaaggtaaaggtggacgaagaagaaatcgaagca
ttcttgccgggcatctaccgcaaactggaatggctgagcaaggaagaccttatcaaacgc
gttgtttcgatggaattcaaccgcttcctggattattacaagaatgcgccggaaatagac
cagcccagttcgaacgaaaaaggaaaagacaagaaagagaagaaaaaaggagaacgtccg
gagcgcagagagcgttcgcgcaaagccgaaaagggttatacgcgcttgttcatcaactta
ggcaagaccgacggtttcttccccaatcaggttatcgaactcatcaaccgtaacctgaag
aaagagcgtatcgaagtaggacgcatcgacctgatgcagaatttctcgtttttcgaagtg
attgagtcacaagcatcgaaagtggtaagagccttgaacaagacgacttacaacggacgt
aaagtcgtggtggaagtggcttcggaaaacgaaggcaagagcgataagggcggaaagaaa
cgtgtaaaggaaactaaaaaaacaaaatcacgccgcgaagagccggaatacgaaattgca
cgcaagtcgaagcgtaaagacgattggaagcagttcttcgaacacgaaaatgatttcgca
gaacccgatttcggcgaagaggcaggttgggcgaaaaagaagaaaaagcggaaataa
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