Bacteroides salyersiae: K6V25_11720
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Entry
K6V25_11720 CDS
T08777
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bsal
Bacteroides salyersiae
Pathway
bsal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bsal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K6V25_11720 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsal03400
]
K6V25_11720 (mfd)
Enzymes [BR:
bsal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K6V25_11720 (mfd)
DNA repair and recombination proteins [BR:
bsal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K6V25_11720 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
UBD63633
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All DBs
Position
3151620..3154988
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AA seq
1122 aa
AA seq
DB search
MTITELQQQYAVHPNVTAMNRLLKDVSVKHIFCGGLCASSASLFFSVLVRKETCPFVFIL
SDLEEAGYFYHDLTQVLGGERILFFPSSFRRAIKYGQKDAANEILRTEVLSRLQKGEKGL
CVVTYPDALAEKVVSRKELSDKTLKLGVGERVDSTFVTDVLHSYGFEYVDYVYEPGQYAV
RGSIIDVFSFSSECPYRIDFFGDEVESIRTFEVDSQLSREKKDSIVIVPDLAVTGMASTS
FLDFIPRDAVLAMRDFLWLRERIQSVHDEALTPQAIAVQEAEENGGITLEGKLIDGSEFT
VHALDFRRLEFGNKPTGTADATVSFDVTAQPIFHKNFDLAAASFQEYQEKGYSLYICSDS
TKQTDRIRAIFEDRGDKISFIAVERTLHEGFADNELRLCVFTDHQLFDRFHKYNLKSDKA
RSGKVALSLKELNQFTPGDYVVHTDHGVGRFSGLVRIPNGDTTQEVMKLVYQNDDVVFVS
IHSLHKVSKYKGKEGEPPRLNKLGTGAWEKLKERTKTKIKDIARDLIKLYSQRREEKGFA
YSPDSFLQRELEASFIYEDTPDQSKATAEVKADMERDRPMDRLVCGDVGFGKTEVAIRAA
FKAVADNKQVAVLVPTTVLAYQHFQTFRERLKGLPCRVEYLSRARTAAQAKAVLKGLSDG
EVGILIGTHRILGKDVHFKDLGLLIIDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRT
LQFSLMGARDLSVISTPPPNRYPIQTELHTFNEEIIADAINFEMSRNGQVFFVNNRIANL
PELKAMILRHIPDCRIAIGHGQMEPSELEQIILGFVNYDYDVLLATTIIESGIDIPNANT
IIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAPPLSSLTPEGKRRLQAIENFSDLGSG
IHIAMQDLDIRGAGNMLGAEQSGFIADLGYETYQKILSEAVHELKTDEFAELYADEIKGE
GAVSGEQFVEECQVESDLELLLPATYVTGSSERMLLYRELDGLTLDRDVDAFRSRLEDRF
GPVPPETEELLRIVPLRRLAARLGAEKVFLKAGRMTLFFVSNPESPFYQSQAFGKVIDYM
MKYTRRCDLREQNGRRSMLIKDIPNVETAVGVLQEIVALPVG
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgactatcactgaactgcaacaacaatatgccgtccatcccaatgtgacggccatgaac
cggctgctgaaagatgtttccgtaaaacatattttttgtgggggattgtgtgcatcttcc
gcttcgcttttcttttctgtattggtgcggaaagagacctgtccgtttgtttttatcttg
agcgatcttgaagaagcgggatatttctatcatgaccttacgcaagtattgggaggggag
cggatactgttttttccttcttctttccgtcgcgctatcaaatacggacagaaagatgcg
gcaaatgagatacttcgtaccgaggttctcagtcgtttgcagaaaggggagaaggggctg
tgtgtggttacctatcccgatgcattggcagagaaagtcgtttcccggaaagagttgagc
gataagacgcttaagctcggtgttggcgaacgtgttgattccacttttgtaaccgatgtg
ttgcatagttacggtttcgagtatgttgactatgtttatgagccgggtcaatacgcggtt
cgcggaagtattatcgatgttttttctttctcatcggagtgtccctatcgtattgacttt
tttggagatgaagtggagagcatccgtacgtttgaagtggattcgcaactttcccgtgaa
aagaaagacagtattgtcatagtgcccgatctggcggtgacagggatggcatcgacctct
tttcttgatttcattccgagggatgccgtacttgccatgcgtgatttcctgtggttgcgt
gaacgtatacagagcgtgcatgatgaggcgttgactccacaggcgattgccgtacaggag
gccgaagaaaacgggggcattacacttgaagggaaactgattgacgggagtgaatttaca
gttcatgcgcttgatttccggcgtctggagtttggtaataaacctaccggtacagccgat
gccacggtgtcttttgatgttacggcacaacctattttccataagaactttgatttggcg
gccgcttcttttcaagagtatcaggaaaaaggatattcattgtatatctgtagtgacagt
acaaaacagaccgatcgtatccgtgccatctttgaggataggggggataaaatttctttt
atagccgtggaacgtactcttcacgaaggttttgcagataatgaattgcggctttgcgtt
tttacggatcatcagttgttcgatcgttttcataaatacaatctgaaaagcgacaaggcc
cgttcgggtaaagtggctctttcattaaaggaactcaatcagtttactcccggtgattat
gtggtgcataccgatcacggagtagggcgtttttccggattggtacgtatccctaatggc
gataccacacaggaggtcatgaaattggtttaccagaatgacgatgtggtttttgtttcg
attcattcgttgcacaaggtatcgaagtataaaggaaaggagggagaaccgccccgtttg
aataaattgggaaccggtgcttgggagaagttgaaggaacgcaccaagaccaagataaaa
gacattgcccgtgatctgataaaactttactcacaacgtcgtgaagaaaaaggatttgca
tatagtccggatagctttttacaacgggaactggaggcgtctttcatctatgaggatacc
cctgaccaaagcaaagcgacggctgaagtaaaagcagacatggaacgtgaccgccccatg
gaccgtctggtttgcggggatgtaggtttcggaaaaacggaagtggctattcgtgccgca
tttaaggcggtggccgacaataagcaggtggccgtactggtgcctacaaccgtattggcg
tatcagcattttcagaccttccgtgaacgcttgaaagggcttccctgccgggtggaatat
ctgagccgtgcccgtacggcggcacaagccaaagcagtgctcaaaggccttagcgacgga
gaggtcggtattcttatcggtacacaccgcatcttgggaaaggatgtacatttcaaagat
ctcggtttgctgattatcgatgaagaacaaaagttcggagtatccgtgaaagagaagttg
cgccaactgaaagtaaatgtagatacactgaccatgactgctactcctattccgcgtacg
cttcagttttcattaatgggtgcacgagatctgagcgtgatttccacaccgccgcccaat
cgttatccgatacagaccgagctacatactttcaatgaagagattattgccgatgccatt
aattttgagatgagtcgcaacggacaggtgtttttcgtcaacaaccgtattgcaaacttg
ccggaattgaaagctatgatccttcgccatattcccgattgccgtattgccatcgggcac
ggacaaatggaaccgtcggaattggaacagattatcctcggatttgtaaattatgattat
gatgtattgcttgctaccactattatagaaagcggtatcgacattcccaatgcaaatacg
attattatcaatcaggcacagaatttcggtttaagcgatcttcaccagatgcgcgggcgg
gtagggcgtagtaataagaaagcattttgctatctgcttgctcctccgttgtcgtcactt
accccggaggggaaacggcgtttgcaggctattgagaatttttctgatttgggtagcggt
attcatattgccatgcaggatctcgatattcgcggtgcaggaaatatgttgggagccgag
caaagcggattcatagccgacttagggtatgaaacttatcagaaaatcctttccgaagct
gtgcacgaattgaaaacggatgagtttgccgaactgtatgccgatgagataaaaggagaa
ggtgcggtgagcggcgaacagtttgtggaggagtgccaggtagagagcgatctggagttg
ctgctgcctgccacttatgttaccggtagcagtgaacgcatgcttttgtatcgcgaattg
gacggattgacattggatagggatgtagatgcttttcgttcgcggcttgaagaccgtttc
gggcctgtacctcctgagacggaagagctgttgcggatcgtgccgcttcgtcggcttgct
gcccggttgggtgctgagaaggtttttcttaaggccggccggatgaccttgtttttcgtt
tccaacccggagagtccgttctatcaaagtcaggcatttggcaaagtgatcgattatatg
atgaaatacacccgccgttgtgatttgcgtgagcaaaacggaaggcgctcgatgctgata
aaagacattccgaatgtggaaacggcggtcggtgtattgcaggaaatagtggctttgccc
gttggataa
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